RNA id: TU245974


Basic Information

Item Value
RNA id TU245974
length 1587
lncRNA type sense_over
GC content 0.39
exon number 4
gene id selenow2a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8279767 ~ 8289808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGCGCAAAATTGCTGTGTTAACTTCAAACGACAGGAAGTGAATCTGAGAGCTGTAGTCGAGGTGTGGTGATGGGTGTACAAATCCAAGTGGAATATTGtGGCGGATGAGGCTACGAGCCCCGCTATCAGGAGCTCAAGCGAGTCGTCGTCGCTGAGTTTCCTGAGGCGGAGGTGTCCGGCTTCGTCGGCAGACAAGGGTGCTTTGAGATTCAGATCAATGGACAGCTAGTTTTCTCAAAGCTAGAAACCAGTGGTTTTCCCTATGAAGATGACGTCATGGAGGCCATCCAGAAAGCTCACGAAGGCAAACCAGTGGAGAAGATCACCAAGAGCCGCCCACCTTGTGTCATACTCTAACTCCTAAGCTTTTGATTACCTCAGAAACTAAGcaatgtaactgtgtgtaatggCTCCTCAGATGTCTCCTTTCGCTTCTGCTTCTAACGAGGTGTTTTTGGACTTAAATGATTGGTGTAGCTAAAAACTAAAAGTTACACTATGAAGCTCTTAGTCCAGTCACTGTCAAACCTGGAGCAGAGACGAAGGGGAGACATCCAAGTGTGCATTAAAGAAGTATAGATATGTGTAtgtcaaaagagaaaaaaataggcTTTCTAACAATATTTGAAGTAAAATTTAAcactgtcagtttttttttttttttttgtaatttacagTTATGAGTTTTAGACAGCTTTGTTGTAAAGTCTCAGTTAATGGAGTCTTGGAAGACACCTTAACGTCATATTACTGTACTAAAATCAGACTTGAACCTTCTACCTTCTTTTTGCTGCCTTGATTCTTCAATTACAGCTATTTAATTatagatgataatataaaataagggCACATTAATGCCCATGCTAGAGTAATAATTATAGTTGAGAtctgaaataaaagtaaacatttaGAACTTTGTTAACGTTTAACAAATCACACAAAGCAGATTTGTTATCCTGGCTAGGATGTTGAAATGGAtttttcatcatgtttcctGATTTTGTAAGACTATTTTCTAGTCAAACAAAACCACTTTGCTGCTTATGTGgactatttattttatctgcTGTGTACCTTTACCATTACAATTAATAAGTTACAGTTAGGATGTTCTTATCAGGGACAGAGGTAACTCATGAATGTAGTTCTTGTCCATTCTTGTCAGGCCTGTTTCGTCTGTGCAAGCTGTGTAACTCAACTAATGTTTTGAAATCTCTATAACATCTTTGTCAAACAAAACCATAAATGGTGGACTGCTACTGTGTTCGACATCTGCTATTGCGTATGACATTGGGCCATTGTTTTTGGGACTGATTGCACAACGACAGCATCACAGagcaaataatattaatgtctAACTTTGAAGCAGCTTAAACACAGGTTGTCTTATCTCTTACCACCTCAGACTCTAGCCCAGATTGTCCTTTTACCTTTCCAGCTCATTGAATCATCCAcatgtggaagccattttgccTCAAAAAACTGAGTTTTTCCCCACCCTGATTCtcaattaattttgtttatgcCAAAGTTCCAAATGTCATAACCTGCAACATGCTTGAATAAAAATTTGTTGAAAGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245977 lncRNA downstream 2832 8279965 ~ 8282317 (-) False selenow2a
TU245903 lncRNA downstream 84371 8176358 ~ 8200778 (-) False G207650
TU245901 lncRNA downstream 84371 8195899 ~ 8200778 (-) True G207650
TU245906 lncRNA downstream 170575 8110658 ~ 8114574 (-) True G207653
TU245805 lncRNA downstream 248301 8033282 ~ 8036848 (-) True G207571
TU245988 lncRNA upstream 63943 8353710 ~ 8358074 (-) True G207732
TU246052 lncRNA upstream 142231 8431998 ~ 8432261 (-) True G207793
TU246126 lncRNA upstream 203048 8492815 ~ 8493041 (-) True G207860
TU246164 lncRNA upstream 244736 8534503 ~ 8534712 (-) True G207895
TU246332 lncRNA upstream 284868 8574635 ~ 8649363 (-) True G208016
XM_026916699.2 mRNA downstream 17511 8249885 ~ 8267638 (-) True slc4a1a
XM_026916495.2 mRNA downstream 36360 8238150 ~ 8248789 (-) True ubtf
XM_026916186.2 mRNA upstream 277004 8566771 ~ 8660121 (-) True spop
XM_034309852.1 mRNA upstream 277004 8566771 ~ 8650751 (-) False spop
XM_026916037.2 mRNA upstream 418385 8708152 ~ 8713297 (-) False ndufa4l
XM_034309971.1 mRNA upstream 426557 8716324 ~ 8728598 (-) False slc35b1
XM_026916460.2 mRNA upstream 426557 8716324 ~ 8728598 (-) True slc35b1
XR_003402976.1 other downstream 557 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 17511 8249885 ~ 8267638 (-) False slc4a1a
TU245460 other downstream 854077 7425730 ~ 7431072 (-) False natd1
TU245462 other downstream 854077 7425730 ~ 7431072 (-) False natd1
TU245466 other downstream 854077 7425730 ~ 7431072 (-) False natd1
TU246334 other upstream 418187 8707954 ~ 8713318 (-) True ndufa4l
trnav-cac_10 other upstream 897753 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 906729 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 906729 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 1120037 9409804 ~ 9419584 (-) False prr15la

Expression Profile