RNA id: TU246111


Basic Information

Item Value
RNA id TU246111
length 300
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G207845
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8485636 ~ 8485935 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgagctcaggttaatgtctgtgcagagttttgtatgttctccctgtgacTTTGTTAGTTtcatctgggttctctggtttcctcccacttcccaaaaaatgagtgtgtaaataggagtgtaaatgtgtgtttgcatgatgccctgcaatggtCTGGCATCCCATCCCGGGTGTACtcccacccagtgttcctgggacaggctcgCAAGGATAAAGCGGATACTGAAGAGGAATAAATGAAAAGACTTTTGGAGATCACAGATTATGGGCTCTATTTTTCCAGccattgtgtaaatatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245973 lncRNA upstream 195731 8287457 ~ 8289905 (+) True G207717
TU245854 lncRNA upstream 234655 8236733 ~ 8250981 (+) True G207612
XR_003402951.2 lncRNA upstream 275769 8209298 ~ 8209867 (+) True LOC113528504
TU245858 lncRNA upstream 284044 8201292 ~ 8201592 (+) True G207616
TU245851 lncRNA upstream 327455 8157944 ~ 8158181 (+) True G207610
XR_004579432.1 lncRNA downstream 13819 8499754 ~ 8534003 (+) True LOC113528543
XR_004579433.1 lncRNA downstream 13819 8499754 ~ 8534003 (+) False LOC113528543
TU246201 lncRNA downstream 206786 8692721 ~ 8717277 (+) True G207927
TU246197 lncRNA downstream 266780 8752715 ~ 8759793 (+) False LOC113528294
XR_004579363.1 lncRNA downstream 267312 8753247 ~ 8759792 (+) False LOC113528294
XM_026917121.2 mRNA upstream 692 8454003 ~ 8484944 (+) True LOC113528522
XM_026917167.2 mRNA upstream 127485 8311016 ~ 8358151 (+) True ngfra
XM_026916463.2 mRNA upstream 259631 8219525 ~ 8226005 (+) True tmub2
XM_026916464.2 mRNA upstream 259631 8219527 ~ 8226005 (+) False tmub2
XM_026916181.2 mRNA upstream 267285 8212034 ~ 8218351 (+) True asb16
XM_034310186.1 mRNA downstream 357262 8843197 ~ 8873465 (+) True LOC113528198
XM_034310049.1 mRNA downstream 390297 8876232 ~ 8882985 (+) True LOC113528197
XM_026916345.2 mRNA downstream 401470 8887405 ~ 8893797 (+) True LOC113528067
XM_034310187.1 mRNA downstream 416793 8902728 ~ 8904664 (+) True LOC113528196
XM_034310050.1 mRNA downstream 423735 8909670 ~ 8915323 (+) True LOC113528195
trnas-cga_1 other upstream 477369 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 632127 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1185952 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1213105 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1369701 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 410683 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 575630 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1458371 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1863467 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1886480 10372415 ~ 10417881 (+) False G208781

Expression Profile