RNA id: XR_003402924.2


Basic Information

Item Value
RNA id XR_003402924.2
length 3203
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC113528294
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8752715 ~ 8772476 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGGAGTGGAGCCAAATTGTCTGGTCAAGGGTGTGTGGGGAGGGTGTGGGGCACCAGGAAGGTGGAGGGAGTTTTCTACAGTGTATcaaatacagaaaatttcaaCGAAAACTGAAGCCAAAGCATCATCACAACGGAATTCTGAGGGGGTTATTCTGGGcatcaagtttatttattttttacacccAGAAACTGTGGGATTGAATTTGACATCAAGGTTTCTTCTGTTCCAGTAACTGCTTTGGATTAAGTCAAAGATGCAGTACTTACAGGATCAGCTGAATTTATGGGATGCCTCCTTTCTTGAAGCCCAACAGCAGACCTAAGATCAGCATTTAAAACTTTTCTCCAAATCTTTGTCATTATATGCTAAGACCACACCAGATCAGGAACTATACATATGAATTCAGTTGGTTCAGCTGTATATCAGCTTGGCAATGAAGCCCATAACATCCAATATTCAGTTTTCCATCAAGTATGACGAAGTTAAATGTCTATTGCATGTGTTAAGTAAACGGCAAATGTATGTAAATTCTGAGGATTGACAGAGGCTGAGATTAGAGGGTGTGACATCCTGTACTGAACACAGAGTCAATAAAGGAGTGATGAATGGTCAATATTAAGGAATTCAGAAAGCAAGCAGTTggagtaaatataaatgtgatttAAGGACAGAGACTACAAGAGAGAAATGAATCTTTACACAAAAATAGAGTGTTTGGATTCACTCCATACtacaatgttgttgttttttcttatttagccttttaaattaatttaaaaggctaaataagaaattaacttaaattcatataaattaaCCTAAATTGATATTATAGTTACTGcattttaatggtcttaaacTCAAATTCATTCAGCAATCTTTAAAGTGAGACtggaattttttattatattaaatcttTCCTGGTGAGCACAAACTGccttttcaaaaataaaagaggGATGCAGGAGATGCTCGGAGCAGGAAACAAGTCACGGCAGTGAAGTGCTCTTGTCCCTTTCTCTGAAAAGCTCTCCAGATAAAAAGTGGCTCACTTTAAATACCATGTTACCTCATGTATCAAACCTTCAATTCATTTCTTCCTTCTAAACCTGATCCCAGGTTCTTTCACATGATGGGAGAAAAACCTCAAGAGAgcaataagaaattaataattaaaaaattataatattaatgttaaaattttatttttcttaggTTGAACATGCTGCCACCACCAACTTCCCTAAGCATCTGCTACACGATTTAGCCTTCTATATGAGACAAATTACTTCTGTTCCTTCTATTCAACAGCCTGCACTTCTGCCTAGTTTCCACAACAgcctttgtctttttaaaaatctttacacAATGTTTTGAGTAAGAGCCATTGTTCCCTGAACTTACAACTCCAGGAATCAGTCAATTCAGGGAAGAGGCTTATTTTATGCTAAgttcaaaatgttttctttatgttcttGATGAAATTGTGTCATCCAAATTTTCATTCAGCCCTCAAACATGTGGAGACTTACCTAAAACAGAGACTTTCTTCAGACCTGCTGGAACTCTGACCTCTCAACTTTGACCTGGAACAGAAGTCATCATGCCCCATGCAAAACCCCCAGATCACCCTGTGACGATGATGATACCATTTACTCCTGTGTTACTGTCcttatattgtgttttatatcaCTGTATTCATGTCATATAAATGGAGATCATAATAGTCCATGCAATAAGCAGTGCCCTCAGTGTCTATATAACATTGGGAAATGAAAGCCAAAAACTGATCCCAGTAAGCACAGTCTCTTAATTTCTATACCTATGACTTCAGACATATGCACCTCTGTACAATGTGCTGTAAGGCACAGATACAGATGAAATATCCTAAAAATACTTGTTTTATTTCGAAAAAGGTAAACGTAAACCGTGTCACCATGTAAAACTGTGTGTAGTGTGGATTATGtctgtgaaatgtgtgaaaggTAGAAGGGTAAAAAAATAGCCAACTACATCATTACTAATGCTTTAGACATTAATGCTGACCCACCACAGATGGAACAGGTTGGGCAAGGACATGTGAAGGTTTCCTGTCAAACCAACTGTGTTTTTGAACGTCTAATGTGCCATCATGTGTAATCACAGTCTACAGGACTGttcagacagtggtgctgggAAACTTGtcccatatttaaaaaaaaaaacaaaacaaacaaaaaaaaaaacaacacacatttaaatgattGGATTATTGCACTTGTATGAATTTTCCATGTCACCATCCTTTAGAAAACCGATTCCCAACCCTGGTCTTGGAATACTTcatgtcctgcacattttaatgttttccctgctcccaacacatTTGATTCAACTAGTCAGCTAATAAAGAGCTCTACATACGTTGACATGGGTGAGCAGGGAAAGCGCAAAGTTGTGCAGGACCAGGGCTGGTTGGTTCACCAAGAAGCAGTGCTGTGCTGCCCTCTAGAGGGTTTGGGTGCAATGAAAAGCCTTTGTTTTGACCAGCACTACTTAAGAATACTGAAAGAATATCTGTTAGTCCCCACGCCGGATGTAACATATGTGATAAGACATTAAGCCACTGCTGATCTATGATATCGGCCGAACCTTCCCATGGCTGCAAATGAATTTTGCTGTCATTTCACTGCATAACAGCAAAATTAGCATCTAATTGATCAATAAACATGAGTTGGCAATTCAATGGAGAACACAGTCTGGCAACTGAGAGTTAAGGGACATGGACAACAAAGCTGAAAACCAGACCAAGAAACACAGTAGGTTTCAGGTACATCAAGTTTTAGAGTCCTTAAGAACTAATTTATATAGCTACCCTAAAATGCCATGGTCATTTACTGTTGAGATGTCTATTCTAGCAACTATTAATTAAATTTCAGGGTTTAACCTTGTTATTCTATTCAAGTCCTTGTCGTAGCTTGTCTTTAAATGTCTGAGATTATATTGGTCTTCATGTGGTCAAGTAGGGGTTCTGGAGGAAAAATGGCCACTGTTCCTGTCAATGAAAATGTCTTCGTGTTTACTGAAATTCCATTTttgaagttctttttttttctctcttgctgtgttagcatgtttgtgtttaaccAATTTTCAATAGACACCTGGAAAGCAAGGTTCTGACTGTAGTGCTTGTTTAATAAACAGTTGCTGACTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246201 lncRNA upstream 38040 8692721 ~ 8717277 (+) True G207927
XR_004579432.1 lncRNA upstream 221314 8499754 ~ 8534003 (+) True LOC113528543
XR_004579433.1 lncRNA upstream 221314 8499754 ~ 8534003 (+) False LOC113528543
TU246111 lncRNA upstream 269382 8485636 ~ 8485935 (+) True G207845
TU245973 lncRNA upstream 465412 8287457 ~ 8289905 (+) True G207717
TU246265 lncRNA downstream 4734 8764526 ~ 8767905 (+) True G207980
TU246211 lncRNA downstream 44696 8804488 ~ 8805433 (+) True G207932
TU246318 lncRNA downstream 92011 8851803 ~ 8874292 (+) True G208004
TU246433 lncRNA downstream 197468 8957260 ~ 8958068 (+) False asphd1
TU246445 lncRNA downstream 222235 8982027 ~ 8983311 (+) True G208105
XM_026917121.2 mRNA upstream 270373 8454003 ~ 8484944 (+) True LOC113528522
XM_026917167.2 mRNA upstream 397166 8311016 ~ 8358151 (+) True ngfra
XM_026916463.2 mRNA upstream 529312 8219525 ~ 8226005 (+) True tmub2
XM_026916464.2 mRNA upstream 529312 8219527 ~ 8226005 (+) False tmub2
XM_026916181.2 mRNA upstream 536966 8212034 ~ 8218351 (+) True asb16
XM_034310186.1 mRNA downstream 83405 8843197 ~ 8873465 (+) True LOC113528198
XM_034310049.1 mRNA downstream 116440 8876232 ~ 8882985 (+) True LOC113528197
XM_026916345.2 mRNA downstream 127613 8887405 ~ 8893797 (+) True LOC113528067
XM_034310187.1 mRNA downstream 142936 8902728 ~ 8904664 (+) True LOC113528196
XM_034310050.1 mRNA downstream 149878 8909670 ~ 8915323 (+) True LOC113528195
trnas-cga_1 other upstream 747050 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 901808 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1455633 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1482786 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1639382 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 136826 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 301773 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1184514 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1589610 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1612623 10372415 ~ 10417881 (+) False G208781

Expression Profile