RNA id: TU246265


Basic Information

Item Value
RNA id TU246265
length 3232
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G207980
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8764526 ~ 8767905 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaatgagaaaaaaatctaaatagtGGCTGTACTCCATCAGGGTAGAGAAAGGTGTCAGGCCTTAAACATGAAACTCATCATTTAAAACCTTAATGGGATTAAAATGAGGCATGGCACAGCTTAATGTAATCTCATTTCAGTCCAATCAGCAcaaattttcttttcctttaattcatttatgatGTAATTGCCCAAAACAGTGGCCCATGAGCTTCCCCACTTGTAGATTTTCCAGAAGAAAATTATTTGTGTTACTCAGTATTAAGAGCATGCTCTAATAATGCTGTTGTATATATCAAGATTGGCATGCTGTTTTTCATACCGGTGCACACTGTATCATATACGCATACAGAGACTGAGTGCCAATAAAAAGAGGTCTCACACACAGTGCTAGAGTACAGAAGTAGACAGTAGAGTATATTGTAGCTGAGAGGATGAGTACAAGAGAGCCTTCAGCCAGGCAGCCACAGATGTCCACTCAACAGAACATTTAGATGTATTCATATGTACATTCAGTCTTCtccaaataaataacataaattactaaaataaataaaccaaaaattaataaatgcaacTTATTTTACATTACCATCTCCCATTCACATGACAGTCCCTATCTTTCCCCCTGTAGAGGGTCCCTTGTCATTTTGCAAACAGACAGTACTCAGCATAACAGAGCTCAGTCTGGAAGCTCTAGAAAGCTCTATAATAGTAAACCTGTTCTATTAAAGGGATCTATGTAGGGTTTTGATTCCCTTTCAATCACAGCAATGCTGTTCATGTTCCAGTGGACAGAACTACCCAATTGTAGTACatacaggtgacaaattaaaggaaaagccaATGGCTGTGTTATGCAGGGTTCGAGTCCACTTGTTTGAGAtagatgaaaatgatataaatcacaTGCTGACCTTCACAGTCAGCAGCTCTTAGGCCAATTAAACACCTAAAGGAGATTTTGGACCAGCGTGTTcatgctctccaccaccatcatcaaaaaaCTAATTGAGGGAATTTTGGAAGAGTGGTGTTcgtccctccagtacagttccagagacttgtagaatcagtaccaaggtgcactgaagctgttctggtggcccAACATCTTATTAAGaaattttgtgttgatttttactttaatttatcaCCTGTCCATGCATTAAAACAAACCCATTTTAGCTACATAGATGGCATTCAGCACAgggaataaataagtaaaatgatataataaataataaaacttagCAGTTGTTAAgacttaaaggaatacttctGTGTTTTTCCAAGTTAATGTCTATCCATCACATCTGTAGCATGTGTGTTTACCACAGACAATAATTTCTATAGTTGCCAaattatttcaataaatatataCGCTTTCCTACATTTTTCAGTTGAAAATTAAGTGCTCCAGCAACTGATTGCTGTATACAGCTTCAAAAGAACAGTCTCGGTAAGtctttctctcatgtctgtctcatccTTTATTATAAGAGTGTAATGGTTGCAGCTTTGAATTGTGTCAcctattttaatcttttttttgttgaattttatGTTATcagctgcccttagactttGACTGTAAGTTAGCTGATTCAACatattttccattcttttcttaGTGCAGGGAAACGTCTTGTCCATGGAAACTGCACATATGCTACAGAGATACTGTGAACGGTGACTAGGTTGAAAAATGcaggagtattcctttaaggaACTTTGATCCAGTAAATGTGCAAAGTCCTCTCCTTCCTTGCAATGCAGTGTATTTCCTGCTAGCAGCTCAGTGATGCAGAGACCTGCCCAGCACCCATCACAAGTTAACTTCTGTTCTTGAAGCACCGGAAATAATGTAACAGTACATACTGCCTATCTCTCATATATTACTCTTTTGGTCCGATTAATATTATGGTGAGAAAAGCAAAGCAAGGACTGAAGCAGAAGTTTAAGGGCAGTATGTTAACAGTCCTCCAAACTTCAACACCAAAGCCCTGCTGGGTTATTTTAAGCTCAATATGTAGGTCGTTATCACTGAAAAATGTAACAGAAGCATTTCTGTTAGTTCTGACATTTTAGAAAACCACTGGAGTTCCCCTGGGTGTTTTAGAGGAAGGGTTCTGGGTAAAAAGTCTGACTGTGGAGTGACTATAGAAATGGCAAATCCATCTCTCAgcacttttttcctttctttttctttttcagtcaaATTAGAGGCAGCTATTAGTTTATATGTAATCCAgccataataaataataaaaacaaataaattagggtaacaattcaaattaaaagatttgacataaataataattcattaaaaataaataattaaaactaaacaaactGACACTAGACATTTGCTATGTACACCCTGACAGAAAAGACGTTCCCTTTTCTTTCTATGAAATATTAAActgaagagacagacagagtgggCTAGGAAGAagaaactaaagagatggtatCCTCTgtccatcattcattcatcacatTTCTGGTAACGGCGGTTCAGTAGTTTGGAATACTAACATGCCCACAGCTTTCACCTGTTGTTTCTGCAACTAGTATGATAATGGTCATGTACAAATGATAAGTGCTTttgtacattatattacataccCCTTCCCCAACGGTATGAAATTCAGTCATGGAATATAACTGGGATGAAGAATACAATCCGAAAGTATGTCCGCATCAGGAGGTTTTACATCAGGAGTATGAAACAGGCTTTATTAGCATGCTCTTGCAATTCCTCAGAGGGAAACAAAAAATGGAGATGATCATCTTCAGACCCTCcgtctctttctccctctgatTCCTCTGCCCTTGTCTTCTATCTTCCCCACCTAATGGAGCAGCAggacatttattatttgtaatatattagtATTTAACCTCAAGTTTCCCATTATATCTGAGGCCTAAAAACAGCCTCTGCACCATCTTTCGCTTCCagcctctctgtgtctctcagtgcGTGTTAGGCTCTCTTTCTGTGTCACGGGGGCTGTAGCCATTAGCTGGGGGCATGATGGGGGTTTTGGGCTCAGAGTCCCTACTGACTGAGGGACGATGATGGCGAGAGGCCCGGGTGAAGAGGCGAAAGGCTCCCCTGCAGATCAGACAGAACCAATACACCTGCGGAGCCATGAGCAGAGCAGCACCCATGTTATACTGCCACGGAATGGACAGCGGCACCATGTAAAGGGGGATATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246197 lncRNA upstream 4733 8752715 ~ 8759793 (+) False LOC113528294
XR_004579363.1 lncRNA upstream 4734 8753247 ~ 8759792 (+) False LOC113528294
XR_003402924.2 lncRNA upstream 4734 8755317 ~ 8759792 (+) True LOC113528294
TU246201 lncRNA upstream 47249 8692721 ~ 8717277 (+) True G207927
XR_004579432.1 lncRNA upstream 230523 8499754 ~ 8534003 (+) True LOC113528543
TU246211 lncRNA downstream 36583 8804488 ~ 8805433 (+) True G207932
TU246318 lncRNA downstream 83898 8851803 ~ 8874292 (+) True G208004
TU246433 lncRNA downstream 189355 8957260 ~ 8958068 (+) False asphd1
TU246445 lncRNA downstream 214122 8982027 ~ 8983311 (+) True G208105
TU246490 lncRNA downstream 254270 9022175 ~ 9022947 (+) True G208120
XM_026917121.2 mRNA upstream 279582 8454003 ~ 8484944 (+) True LOC113528522
XM_026917167.2 mRNA upstream 406375 8311016 ~ 8358151 (+) True ngfra
XM_026916463.2 mRNA upstream 538521 8219525 ~ 8226005 (+) True tmub2
XM_026916464.2 mRNA upstream 538521 8219527 ~ 8226005 (+) False tmub2
XM_026916181.2 mRNA upstream 546175 8212034 ~ 8218351 (+) True asb16
XM_034310186.1 mRNA downstream 75292 8843197 ~ 8873465 (+) True LOC113528198
XM_034310049.1 mRNA downstream 108327 8876232 ~ 8882985 (+) True LOC113528197
XM_026916345.2 mRNA downstream 119500 8887405 ~ 8893797 (+) True LOC113528067
XM_034310187.1 mRNA downstream 134823 8902728 ~ 8904664 (+) True LOC113528196
XM_034310050.1 mRNA downstream 141765 8909670 ~ 8915323 (+) True LOC113528195
trnas-cga_1 other upstream 756259 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 911017 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1464842 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1491995 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1648591 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 128713 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 293660 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1176401 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1581497 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1604510 10372415 ~ 10417881 (+) False G208781

Expression Profile