RNA id: XM_026916740.2


Basic Information

Item Value
RNA id XM_026916740.2
length 2084
RNA type mRNA
GC content 0.50
exon number 6
gene id asphd1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8950466 ~ 8958100 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCACGGAAATGATGCGCGCGCTGTATTGCACGGTGTGAGTTAACGTCGGTTCAGGGAGTTTAACGGCTCCTTCGGGTTTTCCCGTGTAAGGAGGAGGGGGGCTGCATACGTCGGAGATTTTCGGAGTCATTTTAATGCGGAACACAACCGCGCTGTACGCTCGGcggctgcagcagcagcagcacacacacacacacacacacacacgcatacacacacaggcggGGAAAACACGGAAGGGGGGAGGCGGGAAGACATACCGAGTGAGCAGCCGAGACGCGTGTCTCAGCCTCTTGGCAGGATGTCATGGTGTCTGGACCTGCTCCCTCTGCCTCCCTGTGTGGAACTGGGTGGGCCTCCCCTGAGCGGCCTTCTGTGGACTCTGCTGCTGCTCTTTCTCTGGTATTGCTACCGTGTCGGCGCCGACCCTCCGTCCTGCTCATCTGGCTCAGCTCACTCTGCTATATCTCGCTCCTCCAGCTGCTCTCCAGTCGAGCCTGGTCATTCCGCCCCCAAACCTTCCCCTGCAATCGCTGTGGAGAGCGGGGAGGAAGAAGAAGCGAAGAGTTACCTGATGCCGGTGTTGAGCCATGCCCCATTTCCTGCTCAAGCAGCACCAGGAAGCAGGAAGTTGTACACAGCACTGCAGGAGTATGCCAAGCGTTACAGTTGGGCCGGGATGGGCCGCATCCACAAGGGCCTGCGCATCCAGACTAGGATGAATGATCGCTGCTCCATTCAGAAGCCCCACCTCTTTTACCTTCCCGATGTTCCCAGCATCCCTTTCTTTCCTCGAGATGCTCATCGCCATGACATAGAGATCCTAGAGGCCAGCTATCCCATAATCCTTGCTGAATTCCAGGCTGTCTACCAGAGAGGCATTGACACAAAGCTGGGGTGGATATACCAAGGACCTaagGGTCAGGCACTGTTCCCACTCTACaatgctggagtgtgtgtggcaaGTAATTGCCGCGCATGTCCCTGTACGTACCGTACCCTCCTCTCCCTCAGAACTTTTATCAGCAGTAACTCCCTTGGCTCAGCAGGTTTCTGGCTTCTGGGCCCTGGGGCCTCACTGGGGGGAACCTATGGGCCAACTAACACACGCCTCCGGTGCCATCTGGGTCTCCAGACTCCTGCACAGTGTGAACTGGTGGTAGGGGGTGAGCCGCAGTGCTGGTCTGAGGGACACTGCCTCCTAGTGGATGACTCCTTCCTGCACACCATTTCGCATAATGGTGGCGCTGAAGATGGTCCGAGGGTGATTTTCAGTGTCGATCTGTGGCACCCAAATGTTGCCGCAGCAGAAAGACAGGCTCTGGACTTCATCTTCAGTCCTGAACAGTAATCAGTTACATATCTCCGAGTTCACCAGTTACACCGAAATATGCAGAGATGGAGCCTAACTGCATCTCATTCAGTTTCAGCTGATCTCTTCTCTAAACTACCAAAAAGAAATATGGAGACAAATTTGACGTATCTTTCCATTACGTGATACGTTGACTATATGTAACTGCATTgtattttccccaaaatgtcctgaaaaagaaaagtttgtcATCCCTCTGAAAGTTCCTCTAAGTAGAAGCAAGACCAAGCACACATATCTGCCCGACACAcatttctgcctctctctagaGCTCTTTATCTAACGCACTCACAAAATCTGTGAACATTAGACAAGCTCAAATTTTCAATATCTTCATATCTCTTTTTGCTTCGTGCCTGTCTTGATAACTCCGATCTCCTGTTGTATCATTTTGTGCCTGATTTGTTAACTTGATCGTGACCTTTTTTCTGATATATACTGTGATTCAAGCTATTCTGtcagtactgtatgtacattatatttatgtCTGTACTGAAGACCTTGTTTTATCATATGgagttttattttcatgatgaattttattttcagacaCATTCTGTGAAGCACACAGCAACAAAATATTTGATCCGACTGCATGCATGTGTTGTGAAGCCTGACTGTACAGCTAATGTGATGCATCGGACCCATCTCCCTTGCAAAGCAAACATGTAATCAACTAAAGGTGTATTCttcaaataaagattttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246318 lncRNA upstream 78653 8851803 ~ 8874292 (+) True G208004
TU246211 lncRNA upstream 147512 8804488 ~ 8805433 (+) True G207932
TU246198 lncRNA upstream 180469 8754701 ~ 8772476 (+) False LOC113528294
TU246445 lncRNA downstream 23927 8982027 ~ 8983311 (+) True G208105
TU246490 lncRNA downstream 64075 9022175 ~ 9022947 (+) True G208120
TU246492 lncRNA downstream 69189 9027289 ~ 9027537 (+) True G208122
TU246494 lncRNA downstream 71571 9029671 ~ 9029875 (+) True G208124
TU246495 lncRNA downstream 73293 9031393 ~ 9031921 (+) True G208125
XM_034310051.1 mRNA upstream 31452 8916948 ~ 8921493 (+) True LOC117598844
XM_034310050.1 mRNA upstream 37622 8909670 ~ 8915323 (+) True LOC113528195
XM_034310187.1 mRNA upstream 48281 8902728 ~ 8904664 (+) True LOC113528196
XM_026916345.2 mRNA upstream 59148 8887405 ~ 8893797 (+) True LOC113528067
XM_034310049.1 mRNA upstream 69960 8876232 ~ 8882985 (+) True LOC113528197
XM_026916597.1 mRNA downstream 4048 8962148 ~ 8966280 (+) True cabp5b
XM_026916898.2 mRNA downstream 28472 8986572 ~ 8990189 (+) True LOC113528379
XM_034310042.1 mRNA downstream 35418 8993518 ~ 9006845 (+) False sh2b1
XM_026916621.2 mRNA downstream 36996 8995096 ~ 9006845 (+) True sh2b1
XM_034310041.1 mRNA downstream 36996 8995096 ~ 9006845 (+) False sh2b1
XR_003402909.1 other upstream 50268 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 944678 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1099436 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1653261 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1680414 7272460 ~ 7272531 (+) True trnac-gca_18
TU246534 other downstream 103465 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 986206 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1391302 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1414315 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 1454884 10412984 ~ 10417881 (+) True G208781

Expression Profile