RNA id: TU246445


Basic Information

Item Value
RNA id TU246445
length 238
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G208105
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8982027 ~ 8983311 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGTATGTGGTAGATTTTGTGGGTGTACTGGCCCTTCTCCCCTTCCTTCTCGTACGGTTCATTTCGGAGGACTTCAATCCCTTCGCCCCCACCTGTGTTGTTCTTACTTGCCTCCGCAACCGAGTACAGCTGGCCAACCTGGTACTCTTCTACTGAGCATGGCAACACCACTTGATATTCTTTGACGAGTACCATGCCGAAGCCGCACAGAACCGGACATCCAACAAGAAGCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246433 lncRNA upstream 23959 8957260 ~ 8958068 (+) False asphd1
TU246318 lncRNA upstream 107735 8851803 ~ 8874292 (+) True G208004
TU246211 lncRNA upstream 176594 8804488 ~ 8805433 (+) True G207932
TU246198 lncRNA upstream 209551 8754701 ~ 8772476 (+) False LOC113528294
TU246490 lncRNA downstream 38864 9022175 ~ 9022947 (+) True G208120
TU246492 lncRNA downstream 43978 9027289 ~ 9027537 (+) True G208122
TU246494 lncRNA downstream 46360 9029671 ~ 9029875 (+) True G208124
TU246495 lncRNA downstream 48082 9031393 ~ 9031921 (+) True G208125
TU246502 lncRNA downstream 58483 9041794 ~ 9044122 (+) True G208132
XM_026916597.1 mRNA upstream 15747 8962148 ~ 8966280 (+) True cabp5b
XM_026916737.2 mRNA upstream 23927 8950466 ~ 8958100 (+) False asphd1
XM_026916740.2 mRNA upstream 23927 8952945 ~ 8958100 (+) False asphd1
XM_026916739.2 mRNA upstream 23927 8953313 ~ 8958100 (+) False asphd1
XM_026916738.2 mRNA upstream 23927 8953334 ~ 8958100 (+) True asphd1
XM_026916898.2 mRNA downstream 3261 8986572 ~ 8990189 (+) True LOC113528379
XM_034310042.1 mRNA downstream 10207 8993518 ~ 9006845 (+) False sh2b1
XM_026916621.2 mRNA downstream 11785 8995096 ~ 9006845 (+) True sh2b1
XM_034310041.1 mRNA downstream 11785 8995096 ~ 9006845 (+) False sh2b1
XM_034310081.1 mRNA downstream 26274 9009585 ~ 9021215 (+) False atxn2l
XR_003402909.1 other upstream 79350 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 973760 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1128518 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1682343 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1709496 7272460 ~ 7272531 (+) True trnac-gca_18
TU246534 other downstream 78254 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 960995 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1366091 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1389104 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 1429673 10412984 ~ 10417881 (+) True G208781

Expression Profile