RNA id: XM_026916153.2


Basic Information

Item Value
RNA id XM_026916153.2
length 8020
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC113527952
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9112966 ~ 9142871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCCATAGGAAGAAGAGCTGCGCTAACGCGAcgatagctagctagtgttttttttttatcctgattcaaaacagtcactgatcatTCTGGAGCAAAAACCTCGAAAATGACCAAGCTGCAGCTCCTGCACCGTGCTCTGAACGAGCGGCTGATGGCGGCGGTGGAGCAGATCATGGAGATGGTGGGCGGCACGGTGCTGGAGTATGAAGAGGAGACGGTGAGAGCGCGCAGAGAGAACGAGATCCTCAGACGGAGGCTCCGGTGGATGGAGGGCGAAAATCCGACCGACTGGCCAGATCCCACTGCTTTTCCTGTCCCAGGTGAGGCCAGCCTGACAGACACACTAGCACTAGAGTCCCTAATTATCAAAACGGAGCCCATTGACTCTTCTGATTTCCAGTTATATGGACCTGACACAAGTCTCACAGCATCAGTATGCACTGCCAATATGGAAATGGTTTATCCTGGCACCAGTGCTCCTGCCGATGCTGGCATTCCTGACGGTATAGTATGGGACTCGGCACAAAGCTATATGGCTCCGCTAGACTTTGACCCCACTCTGTCCACCATGGCAAGGAACAGGAGCCAGAGGAGGTCCTTTGCCTGCCCAGACTGTGGTAAAGTCTTTGGGAGGGAGCAGAGATTGATGTTCCACATGCGTGTCCACTCTGCTGAGAGGCCCTATACATACCGAAGACGTAAAACATGCTTTTATGGGGACAAGAAACGGAAGAAGAAATTACGTGGCCTTTCCAAgACATCAAGAGAGTTCATAGAGGACCTATCTGACACTTCAGAGCAGACAGAGCAGAGTACTGGATCGGCCAACGCTGGTATCTCAACAAGTGCTGGCCCCACTGCCACAGAAGTAGAGCCAAGCGAGGCATCAGATGAAGCCAGTGAACACACCAGCAGCAGTAAGCTCTCTGAGACCAGTGCAGCCAGACCTGTAGGCCTTAAAGCTAAGCAAGGAAGAGAAAAGGCCAAGACAGCTCAGTGCCTGCAGTGTAACAGAGCCTTCACTAATGTATCACGACTGGCCGTTCACATGAAGACCCACAGAAAGCCACTTCCCAGTCAAGATGAACAGAATGTACAGGGAGAAACTGACAGAACAGACAGTGGATCACAACATCTTCCAAAGGTAATAAGGAACAACGAAACCGAGGTGGAAAAGGCAAAAGCAATAGGTCAGAGGCTGTATCAGTGCCCTGAGTGCAAGAAGATCTTTGCTCGCTCCTGTTGGCTCACCTTCCACTTGAAGTCACATGAGCGAGAACGTAAGCGGCAGAAAAAGAAGCAGCTTCAAGATAACAACCTGAAGGACACCCCCCAGGTCCCAGAAGCGCTGAAGAAAGAGGTAGCTTCTGAAAGCAGCAAAGTTCACGTACTAAAGAAAATCTTTGCTTGCCCGTACTGCGATAAGGTTTTCGCTCGTGAAGGGTGGCTTGGACCACATATTCGGAGTCATACAGTTAAGAAACAAAAGAGTGACATTCTTTCCGACGCCATCTTGCCTAATTCTACTAAGAGAAGAAGTCGACGTGTCATTACCCAGCTATCAACCGAAGTTGGCGACGAGCAAACGAAAATTGTTGAACAGTCATTAGGAGAAACTGAAAATTCAGAAATAGTCAACGAACAACCAAAAAATGAGACTTCTGTGTCTCAAAACATCACTATGGAGTTAATAACAAACCCAGAAACCCAAGTAATAATCAGTAATACCTCTGAAGATATCAGTAATGAATCTGAAAGTATCAGTAATGAAACTGAAGCAATCACAAACAAAATCACAGAGGACTCGACCCCAGTCCCTGAGGTATCTTCGGGACAGAAAGGAGGAGTCAAAAAATCAAAGAAGAGATTTCCATGTCAAGAGTGTGGCAAAGTTTATTTGCTGGCTGGTTGGTTGAAGACCCACAAGAAGATGCATAAAAAAGAGCGAATTCTGGAGGAGCACAGGAGACAGCTCATGATGTTGAAAGAGTTTGGACAAAATGACAACAAAGAAGGGGGACAGAGCTTTGTGGAAACAAATATCACCGAAAAgaagcaaaagaagaaaaagaagacttTGGGGCTACAGGAAGGTCTTGatgacaaaaagaagaaaaagaaccaGCTTACAAATGCAGTGCTGCTGAAGACTATGGATAAACCTTCTGATGTCCAGTCAGCCACAGACAAAAGCAAAGAATCTGGTGGTGCAACTCGTGGCCGATGCGTCTGCAAAGACTGCGGCAAAGTGTATGCTAGAAAAAACTGGTTGAGCTTGCACATGCTTGGCCACAGAAAAGCACTGATGGCCTTGCCCCAAAAAGCAAATGATGAGGCACCGAAAAGTGATGGGCAGACGACACAGGGGGGTTCTTCCACTGAGGATTCTAAAGGTCAGAAAGGAAAAGACAGTGGTAAAGCATCATTTCCATGTCCCTTTTGCGATAAAGTCTTTCCAAGAGCAATGCGGCTGATGGTGCACATGCAGATCCACTCAGGCGAGAAACCATACTCCTATCGACAACGTAAAGAACAGTTTTACAGTGACCCGACAAGACCCCGAGTGCCAGATACAGACAAACAGGAGCCTGCAGTAGAAGGCAATGATGAAAAGGGGAAGGATGGAGGAAACGAAGTGACTAGGAGTCAGACTTCTGCAGTGCCGCAAGACCATGCAAGCACTACAGATCCTATGGAAACCGTTCAACCTCAATCAGTTTGCACTGGCAGAAAATTCAACCTCCTTCCTCTGCAGTCATCTGGTGCTGCTACCATCCACAGCACAACTCTTACAAGAACTGATTCAAAATCAGACAGTAGTTTTAGTTTGCAGCCTAGAATTGTTCTAGATCCAGTTATAGCTGAATCCAGCCACTCTACATCATCTGAAGGGGGTGAATTTAAAACAGTAATTGTGGAAACTAGTGACATTCAGCTGCACCAAATGCCTGACTTAGAAACGAATTATGCTGCTACAGGTGGGCAGATGAAGAGTCATCTTCCTCAAACTCCACTTGAAAACTCAATCCCTTATGCCAGCCAAAACACATTGGCTGAGACAGATCATCCAGCTGTTGTTTGTGTTAAAGTAGGTTCAGTTCATAAATATCATGAAAATACTTCCTGCTCTGAAAAGCTGCTTGTCAGTATAGGGGACCAGCAGACCTCAGAGTCCCCAGAACACAGAAAGTCTGAAATTTGCAAAAGGAAGGGTCAGGTAGAAAGCCGAGAGTACTCTTTGTTTGATGTGAAGCAGCACAAGGTGCGATCTGACCCAGAACTTCTGGAAATGGATATAGAATCACAACAGTCAGGAAGCCAAATTCAAACCCATGGAAAGTCAAGGTTTCTTGGTATTGTAAAAGCTAAAAATATTCCAGCCCACTCTGAATATCTAAAATGTGGCATTGATCGAGCTTGTATTTCTGATAAAAAGTTCACTGACGTAGCTCTGACAACAGTTCCAGAATATGTCTCAAATGAATCAAGTTCCAGTGCCATACATCAAGTGTCTCATACTGAGTCAGGCTATATGATCCTCTCAGATGTTAGCGATGATGATGAGTGGGCAATTGTGTCCAATAACCCTGATGAGAAGAAAGACAAGAAAACCTTGAAAATCTCTACCCCGCTACCTGAGGGGTTGGCTGACGCAGGATTCGTCCCCAGCTCTTCTCATAAAGCTGGTGACTCTGACTCAGATATAACGTTTATGTTAGAAAAGACTGGTGAACAAAATTTCCTTGATGGTATGCTCACTAACAGAGATGAGATGGCAGCCACTTCTGTCCAACATACAGAAGAGCCAAGTTCCACAGGGCAGAAGAGGTGGTTTACATGTTTGGCATGTGGTTTAACATTTGCTGGTGAGGCCTCCTTGACACAGCACATGAAGGTGCACTCTGTGTCTGCGGGGACCTACCAGAAGTCACACGCCTTCAAGACACTCAAGAAGAGGGTCAAGAACAATGAAACAAAGATTAAACAACAAGTTGCCCAAGTTCAGACATCAGAAGTAGGTAGTGCTGATTCAACAGACAACTCTGAAATCTCAGGAAAAAGCGACTCAACACTGATAAATGTCAAAACAGCTACGTTATCTGGAAGTTGCCCAGACACTGGTGCAACCAGTCGAAGTTCCAGAGCAGGCTCAAAGACTGTTGACCgaaaatcaaagaaagaaaaaagaactctGCACTGTTGTTATTGTGGGAAAGCTTgtgaaaaaatagaaatgcaTCTCATGCATGATCACCCAAAGGAACCTAAGGTGATAGAAGCTTTGCATTTTAGCAACACCTTAGAAGAAAGGAAGAGGTTATTGAGGCTTCTTTGCAGTAACAAAAAGCTGAAACATGATTACACTACTAGGAACAAAAAGGATGAAGATTTTGTTCATTGCATCTTTTGTCAGGGGTATTATCAGCGAAGTCAGTTTTGGAAACATGCTTTAATATGTGAGCAGAAACAACCAAAAGAGTTCATTCTAACTGAACCTGGCAGCAGTACAGATCTTCCCAACACTAGCCTAAGATCAAGGCCCAGCTTAGCACAGAAAACCTTTGATCCAGAATCTGGGAATCTCATCAAAGATATCTTCTGCAATACTGTACAACAGGCCATTCCAGAGTCAGTGAATCTTCCTTCACCTAAAGctgaacactacactacacactacttaTATTCCATTTCACCTGTTTCAGAAACTAGCAGTACTGAGAGAAACCCAATTCCTGATCATGGATCAGAGAGCCTGTCCATTGTATGCACTGGTAACAGCTCAGCAATGATGAATCTTGATTCAGAATGTTCTGGACCGCTCGTTCTAGATTCATTCCACGGTGCACTGGAGCATTCCTGTACTCCAGTTCAGGAGTCTTGCCCCAGCATAGTACAGGAAGCTCTTACTGAGAATCAAAATGTAACCTGTCCCTCACTTAGAACAAAGGGCATTTCAGAAAAAGAACACCAGTCCACTTTGGAACCTGAAAACAGGCTCAATAACATCCTACAACCCCATACCCCAGTTTTAAACAGTTCTTACCTCTTAGACACGTGGAGCTGCAATCTACAACAAAACACTGATCAAGATTGCCAGAGTTCCTTTACGCAAACATTAGTTTGCAGTGGAAAACATGTTACTCCTCAAGAATCAGTGAGCCATATACATACTGGCAGCAGTGATTCACAACCAAACACTAATCTAAAATCAGACTGGACTGCCATACCAGCAACTGTAAGTGTGGACTTGGAGCAAAGCCTTGCCTCTGATACAGAACCAGAGAGAACCGCCATAATGATGCCACAACTTAGATCGGAGAGGATTGCAAAAAGTAATCCTCATTCAGAGTCAACGAATTGTCTAATTGCAAACTTTTTTAGCAGTGATGCACAGAAAATTGTTAATCCAGAAACAGGAAACATTTCCCTTCAAGTTTTTGGAAATGATGAACATAGAGCCCCAGACATAGAATCACACTGTCGCCTAATTCCAAATCATATTCctagagaaaaacaacaaaccacCGATCCAGAAACATACAATGCAGCACAAATGCAGTTTGATTCTGAAGGTCACATCAGAGATGACACAGAAGAGGGTGGTAAATGTACTGGCCAAGTCAGTGATTTGAAACCTCTTGGCTTAAATTCCACAACAGTAAAGCGGAGATGGGACAGTCGGAGCAGGGATACAAAGAGAAGACGACAAAGTGGCCCCTTGCAGCAAACATcagcagaagagagaaaagaaccACCAGTCACTTGCCAAACTCCTGAGATGAAGTGCGGTTTGCAAATATCTGATGTCTGGAACAGTTTGAAAAACAGCAAAGGAAAAcctaaattaaagctgaagaaaaaacattactgcTTATATTGTAAGAAACCTTCCCCCCGAATGACACAGCATCTCCTATCAGCACATGCTAGAGAACCAGAGGTGGCAAAGGCCCTTAGTTATGACAAGAAGtcaaaggaaaggaaacagttGCTGGATCTTCTGCAGAGCAAAGGAAACCTCTTGCACAAAGATGTGGGTTTAAGTATACCTTTAAGTGAAGAACTACTACCAGCTAATCAAGCGAGTTCTCCTAATTCACAAAGGTCATGCACTTCCAAACAGGAAAATCCTAATCCTGAATCTGTTAGCACCCGTGTTTCAGACACTCGTCACAGTGCAGCACAGCTTCACACTGACACAGAGTCTGCAGGTTCTCCCTGTCAAGACTTGGGGTTAGGTGGTGAACAACTACTTGCTGAATCACAAAATGATCTCACTCCAGACACCAGCTTGGACACTGGTCGAACAAGAAACGACCATGTGCACAAAAATCCAACCTGCAGCTCTCCAGCCTACGACCAGACTGAAACAAGTGAGGACAAGAAAACTGACGCTGAACAAAGCAGCCGGAAAGAACCCATGGTAGAGAATAGGAGGAGGAGCTCTCGTATTCAAGCTCGGCCAATGAGGGGAAGGACAGCCCTGAAGCGGAGAGCATGTCACACAGCTCAAAACTGCACGTTTGTCAGTACTGCACCGCTACGTTCTGCAGTCCCTACCACCTTCGCAGACATGAATACACTCACACAGgAGAGAGACAGTCAAGCAAGTACAAAGATCCATCAAAAAGGTGCAAAAAACAATCTCACTGTGGAGAGAAGCCAGTGGAGATTGAGCTCCATCAACAGCAATTGGACGACAGCACTGCAGCTACATCTGAGCTTTCCAGCAACGCTGAGGAAAGACCTGACTTGACAGACGGAgACACAGGAAGTTTGAGGAAGATCCACAATGAATAATTACCTGATTGCAGACAGGTATCAGACAGTTTATCTCAGAAATGGTGCCTCAAGAAGCATTTGCAACATAGAATGGTATGATATTAAGAACATTAGCTTAGAAGCatattgtgaaaatatttttttataaatggagacaaattcattatttgtattttttgtttacattacattttatatgttgCTTAATCCGATATTTTGATCAGAGGAtcgttacaaaacactgacgaAAAGTATGTTCATTTTACTGTATCATCTAGGTGCTTATTGGTGTGCATAATTACAAGCGtcacaaaaattaaaaagacagcAAGTGAGTGTGATGGAGTTTTGTAGTAGCAGAATCATTCCTTTTCTTGTGTATTCTTGTTGAGCAGGAAGTGAAGCACAGTTCTAAAAGTTCAAATAGGGGTTTCTACACAATTAAAGGAAATCTACATGTTGGACTGTAATCCTAAGTGCTTCCACCTTTACAATGGTGTAGCACAACACAGAGTTAAGAAAAATAGTTGGCATGTGGGAGAATGGTAtggtttccttctttttaatgtttgatTTGGTTTTTATAGGAGAAAGCATGACTGCCTGAGGACTACTAGTTTGCCTAGTGTTTACTGATGAATTAGTGCCTCCACTGCTTTTATGTCTGGAAATTTTAATTTCTCAATTTATATATTGTCTGTATCATTACTTTTATGACATTTTGCTTATGAATCTAAAATTGGAGAGCAACATATATATTCCTTTACAGTATTTCGGGAACATCATGTATTACTGCAGCTGCTCATGGCATGTACTGTACATGAAACTTCATCACCAATGTTACCTACGTCCGCTGTAAATATGacctgagaaaaaaatgaaaacaccaCATCTGAATTTGTAGGTTGTGTATTTTTCAATACAGAAagttattcatttttgtaaCCAGACATTCCACGTGTCAATCACTCAAAAGCCAGTAGGTTCACTTTGACCTAAAGATCTAGTAGCTCCTCAAGCCACCATCCAAAACCTGTTGTACAGTGTGAACAGGAGATAAAAATAAGAAGTGGTGTTTGATATGAATGTCAGCACAGTGATTCTTCAAATGCTCCCGTTAGCAGTGCTGCCTACTACCATAGGAAGAAGAGAGggtaagaggaagaaaacaggGAGTAGGAATTACCATGCTGGGAGTCCTCTAAGGGTAAGAAGTCTTTGAGCAAAGAGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246570 lncRNA downstream 18613 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 58232 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 90761 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 96756 9024761 ~ 9024983 (-) True G208151
TU246517 lncRNA downstream 114480 9007000 ~ 9007259 (-) True G208145
XR_004579419.1 lncRNA upstream 299115 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 299115 9441986 ~ 9446050 (-) True LOC117598997
TU246838 lncRNA upstream 351752 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 586998 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 603625 9746496 ~ 9748039 (-) True G208473
XM_026916158.2 mRNA downstream 1585 9104301 ~ 9120154 (-) True si:dkey-93n13.2
XM_034309669.1 mRNA downstream 12096 9104301 ~ 9109643 (-) False si:dkey-93n13.2
XM_026916173.2 mRNA downstream 65296 9049773 ~ 9056443 (-) True sgf29
XM_026917054.2 mRNA downstream 72648 9045645 ~ 9049091 (-) False nfatc2ip
XM_034309673.1 mRNA downstream 72817 9045645 ~ 9048922 (-) True nfatc2ip
XM_026916931.2 mRNA upstream 1703 9144574 ~ 9152008 (-) True zgc:66443
XM_026916025.2 mRNA upstream 15505 9158376 ~ 9166233 (-) True LOC113527879
XM_026916769.2 mRNA upstream 25511 9168382 ~ 9184513 (-) True mvp
XM_026916047.2 mRNA upstream 53768 9196639 ~ 9203494 (-) False dnal4a
XM_034309663.1 mRNA upstream 53768 9196639 ~ 9203489 (-) False dnal4a
TU246334 other downstream 408421 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 837147 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 854101 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1690667 7425730 ~ 7431072 (-) False natd1
trnav-cac_10 other upstream 44649 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 53625 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 53625 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 266933 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 266933 9409804 ~ 9419584 (-) False prr15la

Expression Profile