RNA id: TU246677


Basic Information

Item Value
RNA id TU246677
length 1615
RNA type TUCP
GC content 0.41
exon number 4
gene id dnal4a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9196496 ~ 9203640 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGATTTAGTTAAAAATAAGTGTTAACATTCACTTGGGTGCAGTTAGAGCTCAAAGAAAAGTGTTCATAAACCATTCAGGCTAAGCACCTAtagctaaaaaaacaaaaaaaaaacactcattcaTTCTCATTAATCACTTTCTCCTGGCCTTGGTTTTTCCCAGACAAGACGCCGGAAGTAGTACAAtcacgtgggtttcctcctccGTGGTTGCTATGGCTGATTTGTCTCCATGTCAACGGTAGTTGAAGAAAGCAAGTTTCATCGCAGCGCGAGACAGCGTAAGAAATCCAAATGGCAGAAACGggagaaagtaagaaagaggAGGCagactacaagagactacacagcTTTCCTCTCATTAGGCACACAGACATGCCGGAGGAGATGAGAGTCGAAACCATGGAGCTGTGTGTCACAGCCTGTGAAAAGTTCGCCACCAATAATGAGAGTGCAGCTAAGATGATAAAGGAGTCCATGGATAAGAAGTTTGGGAGTTCCTGGCATGTGGTCATTGGCGAGGGTTTTGGATTTGAGGTGACTCATGAAGTAAAGAATCTGTTGTACATGTTCTTCGGTGGCAGCctggcagtgtgtgtttggaaatgTTCCTAGCGCTGATCTCAGTCCAGCCTCTTTCCtgttcattcacacactacctacttttatatatttatatacctGTATTCACAGTACTGTTTCAGCTATGCAGATCTTTTTCTACTTGacctttgtgtgcatgtgtgtttatgtaacatttgtaTGTCTGAAAGAAAACCTGACAGTGTATGCCATTTATAGCTCACCTTCTCTTCTACTgtctttttttgctgttttactTTGAACGCAGGGGATCATAGTGGAGTTGTAAAACTTTTTCTCAGCTTCCACCTCCAGTATTGACTAATAACTACTAATAATTGTCTCAGTGAATTATATGGACCGCTTCCATTTATGGATGACACACCGGCAGtgagaatttattttacatctaGGGGACAGATTTATATACCATTCTGTTGGTCCGTGTGCCACTGCAGTGGCACATAGCATAGCAGTGCTGTAGTAATTGAACCCATGTGATTTTTAAAgtgcagtttgtaatgtgtAATTGTTTCTCGACCTGTAATAATCACATAATTTCAGAGATACCTTAGAAAAACTGTGATTGGCAGTATTGGCATGGAGTGGATCGGCTAGTGTCTTTATCtcaggcttctgtttacacttttctggcccggaaataagctccacccccagccaGATCAGAGCTGCTCAGGTCTGCCCTCATTTCATGCCTTAGGAGGCAccagagggctctaaaaattacaaactgctccatTAAGaatatgtgttgtgtgtgtgtgtggtgttgtgtgagagagaagagtgTTTGCagatatcttaaaaaaaaaatacatccatCACAGTTAGTAATACCCCTTCCTTTTCCCCTTCATTTTGCCTGCCATGCAATCTGTTTCAAAGAGCttcctctgtattttttttttttttttttttttttaaggttcaCCCTTATCTCTCACTGTTTTCTTTACTAAACCAGCATTTCTATCAAGTGTGCCCTGTAGGTTAACTTGAATACAAgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246658 lncRNA downstream 72615 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 93370 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 132989 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 165518 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 171513 9024761 ~ 9024983 (-) True G208151
XR_004579419.1 lncRNA upstream 238346 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 238346 9441986 ~ 9446050 (-) True LOC117598997
TU246838 lncRNA upstream 290983 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 526229 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 542856 9746496 ~ 9748039 (-) True G208473
XM_026916769.2 mRNA downstream 11983 9168382 ~ 9184513 (-) True mvp
XM_026916025.2 mRNA downstream 30263 9158376 ~ 9166233 (-) True LOC113527879
XM_026916931.2 mRNA downstream 44488 9144574 ~ 9152008 (-) True zgc:66443
XM_026916153.2 mRNA downstream 53625 9121739 ~ 9142871 (-) True LOC113527952
XM_034310188.1 mRNA upstream 4571 9208211 ~ 9231248 (-) True cbx6b
XM_026916054.2 mRNA upstream 44142 9247782 ~ 9285940 (-) False pvalb6
XM_026916055.2 mRNA upstream 44142 9247782 ~ 9271902 (-) True pvalb6
XM_026917139.2 mRNA upstream 117619 9321259 ~ 9335630 (-) False pdgfbb
XM_026917140.2 mRNA upstream 117619 9321259 ~ 9335630 (-) True pdgfbb
trnav-cac_10 other downstream 8904 9187520 ~ 9187592 (-) True trnav-cac_10
TU246334 other downstream 483178 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 911904 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 928858 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1765424 7425730 ~ 7431072 (-) False natd1
TU246802 other upstream 206164 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 206164 9409804 ~ 9419584 (-) False prr15la
TU246806 other upstream 206164 9409804 ~ 9419584 (-) False prr15la
TU246804 other upstream 209961 9413601 ~ 9419584 (-) True prr15la
XR_004579423.1 other upstream 262840 9466480 ~ 9474478 (-) False copz2

Expression Profile