RNA id: TU246806


Basic Information

Item Value
RNA id TU246806
length 1558
RNA type TUCP
GC content 0.39
exon number 3
gene id prr15la
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9409804 ~ 9419584 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taagagagagagggagagaaacaggtgagaaaaaaaggtttcaggTCATCCACATAGGGCAATGATCTCACTCAGTAGATCGGACTGTAAACAGCATCGAGAGGACTAAACTAAAGGCCAGTAACCTCTGGAGGGAAGACAGCAACCACAGCCTCTGTGACGCACTTTTCACTCGCACAGGGCTCATCTCTCCTTGGCCATGGCTACGGCTGAGCCAGCCCCTGCCTGGTGGAAGCTGACCTTCCTTCGCAAGAAGAAATCTGAGGCCAAGGAGTTGTATGAAGTACCTGCGGAGTACAGTAATAATGCTGAGACAGCACCAGGGACGAGCAGTACGACCGGGACACCTGATGACTGCCAGTTCAATGCTCGCCTTGAACGCATTGTGGACAAAACAGCCACAAAAGGACGGCATGTTAAAGTCTCCCACTCAGGCCGCTTCAAGGAGAAAAAGCGCATCCGTGCAACATTAGCAGAAAACCCAGAATTGTTCCCCAACCAAGACACTTGTAATGGGAACCAGAGCACAGGGAACTGAAGGCTGGGACATCAATCTGTGCACCTTAAATTCATTCACATACATATGCAAATAAATTCTAAATTCAACAGGTTTTGAATGCTGGATTAATTTAGGCATCAACTAAATCAAGCAAAACATGTTACTGCGTTTTAATAGGGTTCTGCTTAGGAAGTCTTGATTGCATTTGTCCAGAGTGGATAAAATGTGGTTTCTCTGTATAGTCCAATAGAATtggtactgttttttttttgttttttttttaaatcatcactACAGCATCGTCACATCTGAAAATGTGTCTGATGGTGCCTAGGTCATCATATTTAATTCTGTTCAGTTGTATTTGGACCTTCAGCTGTTCCACCTAAGAAAGCTGGCTACTTTCTGACAAAGTGGTTTTTAGAGTAAGTCAGGGTCATGTACATTCGGTTTTATTGTTGAAAGCAATTTTGTACGCTTGTTCATTATTGGATGGTTGCTGTTTTTTCAGTGATGTTGAGATTCAGGCAGTACTAGCCAGCAGCTGGAAATAAATTGCTAAGAGTTTACTGAACAAGAACTAATAATTCAGTTCATTCTCACATTCCTGACTGAATTTTTGACCTCTGGTCACTAATAATACAGAGTGGAGTATTCTTGAATTTAATCAAGCACACAAGCATACAAAGAGAAATAAGCAGTTTGCACGGTGTAATTATTTCTATCCACATCCATTTATTTCAGATAACCtataatgtgtgttttccttgttttattgttttttattttattttaatattgtcttttttaaaacattttttaaaagtccAGGTGTAATAACCTCAGTGCCTTATGATCAGAGTTACATTTCTTCCTTCCCTGTACATCACCTGTCACTTTGCTGGATatctttctgtgttttaaactgcATTTGTTTACTGAACTATCTTATGATAttgaaattatattaaattcctcatatgttttaattaaactgtaaaaaatattttacagcaaactaagattttatttgatttgagcATAATACTATTTTGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246658 lncRNA downstream 285923 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 306678 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 346297 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 378826 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 384821 9024761 ~ 9024983 (-) True G208151
XR_004579419.1 lncRNA upstream 22402 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 22402 9441986 ~ 9446050 (-) True LOC117598997
TU246838 lncRNA upstream 75039 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 310285 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 326912 9746496 ~ 9748039 (-) True G208473
XM_026917248.2 mRNA downstream 1143 9401685 ~ 9408661 (-) False LOC113528600
XM_034309943.1 mRNA downstream 18444 9380674 ~ 9391360 (-) True adsl
XM_034309942.1 mRNA downstream 19054 9380674 ~ 9390750 (-) False adsl
XM_026917279.2 mRNA downstream 31555 9373152 ~ 9378249 (-) False tmem150b
XM_026917026.2 mRNA upstream 44747 9464331 ~ 9474478 (-) False copz2
XM_026917024.2 mRNA upstream 44747 9464331 ~ 9474478 (-) True copz2
XM_034309695.1 mRNA upstream 70764 9490348 ~ 9501580 (-) True cbx1a
XM_026916348.2 mRNA upstream 70764 9490348 ~ 9501577 (-) False cbx1a
XM_026916891.2 mRNA upstream 234859 9654443 ~ 9658406 (-) True hoxb1a
TU246677 other downstream 206164 9196496 ~ 9203640 (-) False dnal4a
TU246678 other downstream 206164 9196496 ~ 9203640 (-) True dnal4a
trnav-cac_10 other downstream 222212 9187520 ~ 9187592 (-) True trnav-cac_10
TU246334 other downstream 696486 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 1125212 8284474 ~ 8284592 (-) True LOC113528661
XR_004579423.1 other upstream 46896 9466480 ~ 9474478 (-) False copz2
XR_004579397.1 other upstream 311258 9730842 ~ 9731250 (-) False hoxb8a
trnac-gca_22 other upstream 965465 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 1031912 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 2012926 11432510 ~ 11432628 (-) True LOC113528663

Expression Profile