RNA id: XM_026916728.2


Basic Information

Item Value
RNA id XM_026916728.2
length 2008
RNA type mRNA
GC content 0.45
exon number 2
gene id hoxb8a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9729851 ~ 9732566 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCGTAccctctccctttctcctttACTCTCATTTTCATTCTCTGTCTCCCTCCGTACCAGAAGCGCGAGAAGCGGTGGCCGTGTGGGGACGCAAGAAGCCAGAATAGAATGAGGATTCAATAACAGATGCAAATTATCGTGAAAGGACGCAGCAAAATATGACACATATCATTTACAGAGGagtaaattacagaaaactgtTTGGGAACTGGCTCCCTGCACCCGAACTGTGATGCTGGATCTTCTAAGCGTCGCGTATTCTTGGAAGCTGAATAGCCGTGGCTTTAAAGAGGCTGTTTAAAACGGTATACAAACACAAGTTCTCCCGTTGTTGGACGTTTATTGtggtctttatttatttttgcttcagAATAATCGGGTGTGGCTAGACTGTCCCAGGCTCACGTACTAACACAATTCAATATAAAACAACCCCCTCATCAAAAACAGCATCGACTGCAGCAAAACATGAGCTCCTATTTTGTCAACTCCCTCTTCTCCAAATACAAAAGTGGTGACACACTACGCCCTAATTATTACGAGTGCGGTTTTGCGCAGGACCTGGGGACTAGACCCACCGTCGTGTACGGTCCAGGCACAGGAGCAACTTTCCAGCATGCCCCACAGATTCAGGAGTTTTACCACCACGGCGCGTCCACGCTCTCGGCTGCACCTTACCAGCAGAGTCCATGTGCCGTAACCTGCCATGGCGAACCTGGCAACTTCTATGGCTACGATGCTCTCCAAAGGCAAACACTCTTCAGTGCCCAGGACGCCGACTTGGTCCAGTATAGCGATTGCAAACTCGCCGCGGGAGGCATCGGCGACGAGACGGACAACGCGGAGCAGAGTCCTTCTCCTACGCAGCTGTTCCCCTGGATGCGACCACAAGCTGCCGGACGCAGACGAGGCCGCCAGACCTACAGTCGCTACCAGACACTTGAGCTGGAAAAGGAGTTCCTCTTCAATCCGTACCTGACACGCAAACGGCGCATTGAGGTGTCGCATGCCTTAGGACTGACTGAACGGCAGGTCAAGATCTGGTTTCAGAACAGACgtatgaaatggaaaaaagaaaacaacaaggaCAAGTTTCCTAGTAGTAAGTCTGAACAGGAGGCAATTGAAAAGGAGAAGCGGGAGAAGGAGCAGGCGGCTGGAGCACAGTCAGCAAAAGAAGACTGCGAGAAGGCGAAACAAATATAGGACGGATGAGAGCAGGCAGCAATCAGGAGCgcgcggacacacacacaaacacacacacacacacttacatacatacatacagtcatATATATACTTAAAATGGACATCGAGGGGCCGAAGACAAAACAGTTTGGAAGGTTTGTCGATTTTCAGTCTACGATGAGTAGATAGAAATAGTTGGTGAAATAGATGAGCGGTGATGGAGAAAATGAACTCTAAATCTGCGTGATCATCGAACTTTATTATCACGAAAGACGTGAAGCATTTCTACCTTTTCCTAATGTTCAGAGAGTAGGCCTATTATAGTGTGTAAATTAGCCTCCTTACTTCGTGGAATAAATATTGTGAAAACTTGGTTTCTATTGTTAGATTTTTGACATTAACCTTATCTGGGCAGCTGTATAGTTCTTAAGTTAAATGGTGCACTTTTAACTCTTGTCACTTATATGTTATGATGACGTATCGACTAATGACATCCAACAACATGAAACTGCCTATTTATGCCGTAGCATATCTTTTTACACTTACTAAGTTTCTTTCAAATTGATGAGATTTTGTTATCTTCCTTTCTTGGGTTAAGCATGCGCACAGtggaagaaatgaatgaaaaggaaataaaaaggaTGTAATGTGACCCATTGTTTACTGTGAGACAGATTTTTGTACTGTATTCGTGCATTTGTTCATGGAAACCTGGCAATATGCTTTCATTGTTCTTCACTTTGTTCTATGGACTAAACCTTGAAGAAGACAAATAAAGTGGGCACAATAAAGTTTACAGGCGAGAATCGACGATGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246838 lncRNA downstream 224101 9494623 ~ 9505750 (-) True G208391
XR_004579419.1 lncRNA downstream 283747 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA downstream 283801 9441986 ~ 9446050 (-) True LOC117598997
TU246658 lncRNA downstream 605970 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 626725 9102911 ~ 9103126 (-) True G208189
TU246954 lncRNA upstream 13930 9746496 ~ 9748039 (-) True G208473
XR_004579453.1 lncRNA upstream 97061 9829627 ~ 9844421 (-) False LOC117599011
XR_004579454.1 lncRNA upstream 97061 9829627 ~ 9843423 (-) False LOC117599011
XR_003402943.2 lncRNA upstream 104684 9837250 ~ 9838412 (-) False LOC113528446
XR_003402942.2 lncRNA upstream 104684 9837250 ~ 9838251 (-) True LOC113528446
XM_026916032.2 mRNA downstream 997 9724361 ~ 9728854 (-) True hoxb7a
XM_026916403.1 mRNA downstream 7214 9675762 ~ 9722637 (-) False hoxb3a
XM_026916420.2 mRNA downstream 12382 9715010 ~ 9717469 (-) True hoxb6a
XM_026916418.2 mRNA downstream 16109 9711139 ~ 9713742 (-) True hoxb5a
XM_026916406.2 mRNA downstream 19546 9675762 ~ 9710305 (-) False hoxb3a
XM_026916726.2 mRNA upstream 4437 9737003 ~ 9741333 (-) True hoxb9a
XM_026916217.2 mRNA upstream 35301 9767867 ~ 9769918 (-) True hoxb13a
XM_026917222.2 mRNA upstream 164300 9896866 ~ 9904394 (-) False nr1d1
XM_026917220.2 mRNA upstream 164300 9896866 ~ 9903254 (-) False nr1d1
XM_026917219.2 mRNA upstream 164300 9896866 ~ 9903253 (-) True nr1d1
XR_004579423.1 other downstream 255373 9466480 ~ 9474478 (-) False copz2
TU246802 other downstream 310267 9409804 ~ 9419584 (-) False prr15la
trnac-gca_22 other upstream 652483 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 718930 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1699944 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1803994 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1833444 11566010 ~ 11566128 (-) True LOC113528658

Expression Profile