RNA id: TU246950


Basic Information

Item Value
RNA id TU246950
length 1726
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G208472
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9746285 ~ 9748010 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aataaccATGGTATTGAGTTACTGCTATGTGAAAAAATACAAGACAAACATCTAGCTGACAATTCTTCAAAGAAGTGACAGAAACTCATTTTTTGTCACTAATAAATaagctttattaaaattatattaccatattacattaaaaaaacaaatcaaaccaaGCAAGCAATCTAACAAAATCGCAATACTCACACGGAAAGAGTGAATGTCTAGGCCAACTACAGTTTCTCAGTCTTTTCCCAAAAGGCCATGTAGTGTCTTGAAACCGTTCGAATCAAATcatataaaacagtaaaatatattcatataattcacacacatgtctttgtatacaaaataaaacGCTGTGAAAACCAATATATTTGAACATCGTAAaacatgtatatttaaaaactattctaatttaaaaaaatatgaataaacttTGAGCCTCAAATATAAAgttggtaaataaataatgaatgaaacattttaaaactgtggcaTAAATTATTTCAATAAACCACAACTTTTGCGTACAGATTTGCAAACCTATGTTTAGGTTATTTCCAGAGgtgttaaaaatacatttggcTTTGAAAGTGAACATTTCACAATCGCTGTGATCCAAGTGAATTAATACAGGCCTGTTACTACAGTGCTCCCTGTAGAAGTCTGGTTCCTATTCAGGAAACAAATctatcatttgtttttcactcatTCCCAAACTGAATATATTTGCTAAGAAAATAAACTTGAGTTATTAACTATATTAATTTGATATAGAGAGTAACTATCAATCAGCCACTAATGCTACTTTTCTGTAATCCTATGGGGTTATTTTCTCCTCACAGTAGTCTCATGCCCTTAAACAATTACTCACATGGCCCATCAGACTCCACGTTTGAGCTTTTGATGTGCTAAGCATTGTACAAAAGATTTAGACATTCTTGCATCCTTCGAACAATCTTTATGAAACGAAAAATTAATGCGAACGTGTTATCTGGTACACTATTATTTACCcacctctcctctcttttctgGAATATTCAACATTCTCTGGAAAGTCTGTAAAGCTTTTTGCTATAAGTCAAGACAAGTATAAGTCAAGACAAATCTGTCGAGTCATCGTGGCGTCGATTCGTGTGCATCATGGTGGTAATGGCAGTCTACTTCTGCTGTTATTACTTTCGCTCCATTGGCTTGGGAATGTTGCGCAGTCGGTCGTATAAAGGTTTGCTGCCTGACTCCGAGAAAGGCTTCACACGTTGAAAAGATGGGAGTAAAAGTGGGAAAGTATCTGCTAGACGGTTAGATGGAGCTTCAGTTGTAACAGGATAAACAGAAATATACTGGTAGGCTACACAAGCCTTTAAAAAGCCCATCTTAGTGAGTCCGAAGTCTGGTACTGGAAGTTCAGTCTGGAGTCCAGGGTAAAATTGGAGGTGTCATATTCTCGCCTTGCGTTGAAGGCAAACACGCCAATCTTGGAAGCCAGGCAGGAAAGAAGCGTGATTCTTCCTAAGCTCAGATCCACGATGGATTTGGTGAGGCGAAAGAACCAAAACTTCCTTACCAATGGCAGATAATGCGATTTTCCTGTCCGGAGTGCTACCGCCTCTGACACGCCCAATCATTCTGCGGTTGGAACTCTGCTGCACAAGGCCCAGAGGCCCTTGACTCTTTGGCAGCGAAAGGGGTACACACGTGGAGCGAAAACTGAGCTTATAGAGCATGATATAGCTGC

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246862 lncRNA upstream 7419 9737009 ~ 9738866 (+) True G208415
TU246885 lncRNA upstream 12238 9732608 ~ 9734047 (+) True G208430
TU246850 lncRNA upstream 190471 9555612 ~ 9555814 (+) True G208403
TU246828 lncRNA upstream 248236 9495015 ~ 9498049 (+) True G208382
TU246822 lncRNA upstream 255551 9485698 ~ 9490734 (+) True G208378
TU247001 lncRNA downstream 98074 9846084 ~ 9858882 (+) True G208507
TU246996 lncRNA downstream 116967 9864977 ~ 9883127 (+) True G208504
TU246973 lncRNA downstream 291399 10039409 ~ 10061965 (+) False G208488
TU246974 lncRNA downstream 291399 10039409 ~ 10061965 (+) True G208488
TU246978 lncRNA downstream 291399 10039409 ~ 10061965 (+) False G208488
XM_026917137.2 mRNA upstream 257744 9477811 ~ 9488541 (+) True nfe2l1a
XM_034309941.1 mRNA upstream 345447 9390424 ~ 9400838 (+) False si:dkey-110g7.8
XM_026916101.2 mRNA upstream 345447 9393743 ~ 9400838 (+) True si:dkey-110g7.8
XM_026916102.2 mRNA upstream 345447 9393743 ~ 9400838 (+) False si:dkey-110g7.8
XM_026917277.2 mRNA upstream 433503 9301142 ~ 9312782 (+) True csf2rb
XM_026916970.2 mRNA downstream 31513 9779523 ~ 9781922 (+) True eve1
XM_026916012.2 mRNA downstream 58788 9806798 ~ 9811581 (+) True atp5mc1
XM_026916900.2 mRNA downstream 66074 9814084 ~ 9827009 (+) True ube2z
XM_034310315.1 mRNA downstream 92880 9840890 ~ 9879885 (+) True igf2bp1
XM_026916952.2 mRNA downstream 138774 9886784 ~ 9893496 (+) True si:dkey-225f5.4
TU246534 other upstream 682970 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 843608 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1738018 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1892776 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 2446601 7299613 ~ 7299684 (+) True trnac-gca_21
XR_003402918.2 other downstream 196296 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 601392 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 624405 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 664974 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 1789037 11537047 ~ 11537165 (+) True LOC113528662

Expression Profile