Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU246996 |
| length | 696 |
| lncRNA type | sense_over |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G208504 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 9864977 ~ 9883127 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU247001 | lncRNA | upstream | 6095 | 9846084 ~ 9858882 (+) | True | G208507 |
| TU246950 | lncRNA | upstream | 116967 | 9746285 ~ 9748010 (+) | True | G208472 |
| TU246951 | lncRNA | upstream | 116967 | 9746850 ~ 9748010 (+) | False | G208472 |
| TU246862 | lncRNA | upstream | 126111 | 9737009 ~ 9738866 (+) | True | G208415 |
| TU246885 | lncRNA | upstream | 130930 | 9732608 ~ 9734047 (+) | True | G208430 |
| TU246973 | lncRNA | downstream | 156282 | 10039409 ~ 10061965 (+) | False | G208488 |
| TU246974 | lncRNA | downstream | 156282 | 10039409 ~ 10061965 (+) | True | G208488 |
| TU246978 | lncRNA | downstream | 156282 | 10039409 ~ 10061965 (+) | False | G208488 |
| TU247237 | lncRNA | downstream | 338156 | 10221283 ~ 10221539 (+) | True | G208700 |
| TU247238 | lncRNA | downstream | 342456 | 10225583 ~ 10226503 (+) | True | G208701 |
| XM_026916900.2 | mRNA | upstream | 37968 | 9814084 ~ 9827009 (+) | True | ube2z |
| XM_026916012.2 | mRNA | upstream | 53396 | 9806798 ~ 9811581 (+) | True | atp5mc1 |
| XM_026916970.2 | mRNA | upstream | 83055 | 9779523 ~ 9781922 (+) | True | eve1 |
| XM_026917137.2 | mRNA | upstream | 376436 | 9477811 ~ 9488541 (+) | True | nfe2l1a |
| XM_026916102.2 | mRNA | upstream | 464139 | 9393743 ~ 9400838 (+) | False | si:dkey-110g7.8 |
| XM_026916952.2 | mRNA | downstream | 3657 | 9886784 ~ 9893496 (+) | True | si:dkey-225f5.4 |
| XM_034310316.1 | mRNA | downstream | 3675 | 9886802 ~ 9893496 (+) | False | si:dkey-225f5.4 |
| XM_026917260.2 | mRNA | downstream | 29641 | 9912768 ~ 9917101 (+) | False | msl1a |
| XM_026917258.1 | mRNA | downstream | 29738 | 9912865 ~ 9917101 (+) | True | msl1a |
| XM_026916963.2 | mRNA | downstream | 34835 | 9917962 ~ 9926203 (+) | True | casc3 |
| TU246534 | other | upstream | 801662 | 9061565 ~ 9063315 (+) | False | nupr1b |
| XR_003402909.1 | other | upstream | 962300 | 8896618 ~ 8902677 (+) | True | LOC113528069 |
| trnas-cga_1 | other | upstream | 1856710 | 8008186 ~ 8008267 (+) | False | trnas-cga_1 |
| TU245701 | other | upstream | 2011468 | 7853191 ~ 7853509 (+) | True | G207480 |
| trnac-gca_21 | other | upstream | 2565293 | 7299613 ~ 7299684 (+) | True | trnac-gca_21 |
| XR_003402918.2 | other | downstream | 61179 | 9944306 ~ 9979954 (+) | False | rapgefl1 |
| TU247340 | other | downstream | 466275 | 10349402 ~ 10417881 (+) | False | G208781 |
| TU247338 | other | downstream | 489288 | 10372415 ~ 10417881 (+) | False | G208781 |
| TU247339 | other | downstream | 529857 | 10412984 ~ 10417881 (+) | True | G208781 |
| XR_003402977.1 | other | downstream | 1653920 | 11537047 ~ 11537165 (+) | True | LOC113528662 |
