RNA id: TU247081


Basic Information

Item Value
RNA id TU247081
length 1796
lncRNA type sense_over
GC content 0.38
exon number 5
gene id LOC117599011
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9829627 ~ 9927942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccaaaaaaaaaaaaaaaaaaaaaaaaaaaagtatcaagATAGGCACTTCTTTTTGTGTCTGATTTGACACGTGTCACATTTACTTATTCGATCACATAACTAGTACTGCATAATTCACGGTCGTTTCATTTGATAAGTGAatatcaaagttttttttttttttgaatggcTATGCTAATTTTTAACGGGTTGAGAGTGGGGTGAGAAAAAAGTGGGCAGggtggaggattttttttttttttataaacacagtCCCACTAGGCTATTGGAACATTGTAAGGTAGATCCAGTCCTAGCTTCTGAGAGATCCTGACTATACATCTTACGTAGTCACATCTCACGTATACATCTCACTATTCACGTAGTCACACCTTAACGTCATTCTGCTCGCGCTGAACACAGCACGCGTTTGCATTAATACAGTAACCCAttaatttcacatatttttaaattcttgtAGTAGCTGCTAAACATGTGCTATCCGAAATATTAGGCACCATGCATAGTAACGTGAACTTTATTAACACAATGCAGTCAATGCAATATTAGAGCCATATCGACTTAATgactgctttttaaaacaaaacgtTAGGCTATTAGCCCATCGATCCTTCAGGCACAACAGCTTAGAGTTTATGACTCAACAAAAGATCCATCGAGGCCTAGGCCTTACTTTAGACCAGGCCTTTCTTCATGTATGAAACGGAGTACTAATGGAAGCACTGCAGTAAACGGCAGCAACAACATCGAGGTTAGTTTATGTTGAAAACAAAGAATAACCCAAAAAATAGCAGCCGAACTTATTAGAAAATATTCCTGTAAAAGCACGTGATGCGCCATTCACAGCCTATCGTCTTTTGTGCTTTAACTATCAAACGCTACAATGGCCCTATTAAGaagataaatatatttatgtcgatatggaaaaaaaacaggaaggtGTTTGGAAACAAAGTTAAAAACAGTGAcctatactgtatttttaaaccCAATATATCCACAAATTTGACCcataagaagaataaagcaAAAGGGCGAAACATATCCCTGTATGTAGCTACACCTCCCTGGTATGTATGCCATATAGCATAATGCATACATTCATGTTTGCAGCAACAGAGCAAAGATTTAAAGTAAAACCAAATACCTTTGTTTCTTAGGGACAGAATGTTCTACTTCAATTCGTTTGCCGTGAAGTTCCACTtACCAGAAAATGTTTCAATTGCTTTCATAGCCCATTGGTCGTCCGGGCAATCAACAAACGCGTATCCCGTTTTCACTAGAAACTGCCCAGAGTAAGGAATCTTGTAGTCTTCAAAGGTTTTAACCAAGTCCTCTGCGGTCACATTTTCATTCAGATTTCCAATATATAGCTTGTtcattgtggaaaaaaattcaatgcTTTCcccgtttttaaaaaaacttttctacaAACAGGGGGGCTATCTGTCCAAAATATATATTGAGCCTgctaaaaaatgaaaagcacgTGTAAATTACAACGAGTTGCAACTGAAAACGAAAGAATTCCGAAGAAGAATCTTAAAATAATACGGGGAAAGTTCGCCTAACACTAACGTTGCAGTCCGATGAAGTCCGGCGGCGAGTGGAGAATCCTTGATTGTAGCAATCCTGGCGAATTTCCTGCACCGTGTAGCAAACGGTATTGCTCTGTATTAATGTGATGGTGGTTATGGTGGAATAGTGGTAGAGAAGTATGGCGGGATCGCGagaatttcttttctctttctctctatctgcccCTCAGCGTAGAGCTGTACCCTTGCACTGTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402943.2 lncRNA downstream 2615 9837250 ~ 9838412 (-) False LOC113528446
XR_003402942.2 lncRNA downstream 2776 9837250 ~ 9838251 (-) True LOC113528446
TU246954 lncRNA downstream 92988 9746496 ~ 9748039 (-) True G208473
TU246919 lncRNA downstream 109580 9729869 ~ 9731447 (-) False hoxb8a
TU246838 lncRNA downstream 335277 9494623 ~ 9505750 (-) True G208391
TU247174 lncRNA upstream 136035 10063977 ~ 10066356 (-) True G208649
TU247295 lncRNA upstream 259094 10187036 ~ 10187252 (-) True G208758
TU247314 lncRNA upstream 293768 10221710 ~ 10290885 (-) True G208771
TU247529 lncRNA upstream 413969 10341911 ~ 10342222 (-) True G208951
TU247554 lncRNA upstream 519794 10447736 ~ 10450540 (-) True G208964
XM_026916217.2 mRNA downstream 71109 9767867 ~ 9769918 (-) True hoxb13a
XM_026916726.2 mRNA downstream 99694 9737003 ~ 9741333 (-) True hoxb9a
XM_026916728.2 mRNA downstream 108461 9729851 ~ 9732566 (-) False hoxb8a
XM_026916727.2 mRNA downstream 108461 9729851 ~ 9732566 (-) True hoxb8a
XM_026916032.2 mRNA downstream 112173 9724361 ~ 9728854 (-) True hoxb7a
XM_026916517.2 mRNA upstream 60174 9988116 ~ 10033085 (-) True ppp1r9ba
XM_026916760.2 mRNA upstream 114239 10042181 ~ 10061921 (-) False col1a1a
XM_026916761.2 mRNA upstream 114239 10042181 ~ 10061921 (-) False col1a1a
XM_026916759.2 mRNA upstream 114239 10042181 ~ 10061921 (-) True col1a1a
XM_026917099.2 mRNA upstream 194444 10122386 ~ 10134023 (-) True nags
XR_004579397.1 other downstream 109777 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 366549 9466480 ~ 9474478 (-) False copz2
TU246803 other downstream 421443 9409804 ~ 9419584 (-) False prr15la
trnac-gca_22 other upstream 457107 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 523554 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1504568 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1608618 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1638068 11566010 ~ 11566128 (-) True LOC113528658

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_01785791_01788743.mRNA True 1997 mRNA 0.39 4 CI01000034 1785235 ~ 1789815 (-)