Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579454.1 |
| length | 644 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | LOC117599011 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 9829627 ~ 9927942 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU246954 | lncRNA | downstream | 81588 | 9746496 ~ 9748039 (-) | True | G208473 |
| TU246919 | lncRNA | downstream | 98180 | 9729869 ~ 9731447 (-) | False | hoxb8a |
| TU246838 | lncRNA | downstream | 323877 | 9494623 ~ 9505750 (-) | True | G208391 |
| XR_004579419.1 | lncRNA | downstream | 383523 | 9441986 ~ 9446104 (-) | False | LOC117598997 |
| TU247084 | lncRNA | upstream | 15336 | 9858759 ~ 9883197 (-) | False | LOC117599011 |
| TU247080 | lncRNA | upstream | 34204 | 9877627 ~ 9927908 (-) | True | LOC117599011 |
| TU247137 | lncRNA | upstream | 71484 | 9914907 ~ 9917529 (-) | True | G208613 |
| TU247174 | lncRNA | upstream | 220554 | 10063977 ~ 10066356 (-) | True | G208649 |
| TU247295 | lncRNA | upstream | 343613 | 10187036 ~ 10187252 (-) | True | G208758 |
| XM_026916217.2 | mRNA | downstream | 59709 | 9767867 ~ 9769918 (-) | True | hoxb13a |
| XM_026916726.2 | mRNA | downstream | 88294 | 9737003 ~ 9741333 (-) | True | hoxb9a |
| XM_026916728.2 | mRNA | downstream | 97061 | 9729851 ~ 9732566 (-) | False | hoxb8a |
| XM_026916727.2 | mRNA | downstream | 97061 | 9729851 ~ 9732566 (-) | True | hoxb8a |
| XM_026916032.2 | mRNA | downstream | 100773 | 9724361 ~ 9728854 (-) | True | hoxb7a |
| XM_026917222.2 | mRNA | upstream | 53443 | 9896866 ~ 9904394 (-) | False | nr1d1 |
| XM_026917220.2 | mRNA | upstream | 53443 | 9896866 ~ 9903254 (-) | False | nr1d1 |
| XM_026917219.2 | mRNA | upstream | 53443 | 9896866 ~ 9903253 (-) | True | nr1d1 |
| XM_026916517.2 | mRNA | upstream | 144693 | 9988116 ~ 10033085 (-) | True | ppp1r9ba |
| XM_026916760.2 | mRNA | upstream | 198758 | 10042181 ~ 10061921 (-) | False | col1a1a |
| XR_004579397.1 | other | downstream | 98377 | 9730842 ~ 9731250 (-) | False | hoxb8a |
| XR_004579423.1 | other | downstream | 355149 | 9466480 ~ 9474478 (-) | False | copz2 |
| TU246803 | other | downstream | 410043 | 9409804 ~ 9419584 (-) | False | prr15la |
| trnac-gca_22 | other | upstream | 541626 | 10385049 ~ 10385120 (-) | True | trnac-gca_22 |
| XR_003402902.2 | other | upstream | 608073 | 10451496 ~ 10470518 (-) | False | tecpr1b |
| XR_003402978.2 | other | upstream | 1589087 | 11432510 ~ 11432628 (-) | True | LOC113528663 |
| XR_003402963.1 | other | upstream | 1693137 | 11536560 ~ 11536678 (-) | True | LOC113528647 |
| XR_003402973.1 | other | upstream | 1722587 | 11566010 ~ 11566128 (-) | True | LOC113528658 |
