RNA id: TU247137


Basic Information

Item Value
RNA id TU247137
length 1748
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G208613
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9914907 ~ 9917529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCTCTTAAGATAGGTCTCCCAAGCCaccgccaccctgaccaggatagcTGCAAATATTTGGGGTGTAGTATAATGCATTCTCAGCGTTTTATATTTGCAAATAAGTCTGCAAACTACACTGATCCCCCACCCCCCTcaccacttcaatattatgggctataaTATTCATGACATCCTAAGTTCAAACTGGGGTGAATagttatgcaaggcactgtagaACAATGTATAACTTACAATCTgatagaaaatgttaaaatgataaaactaaataaatgtgataaaagATATCAATAGCAAATACCAAAGTAGCAACTGGGGGTGAACATTTAATGGGCTGTTTTTATAAACACCACATGCAAAATAGCTATAACTGCTGCCATATAGTGGGCATAAATTACCTGATAAAagaactgaaacacacaaacataattttaagatattttaatacctgaaatattttctttaggCGCATTAGAttatctttcatttatttgcaGAATCAACACTATGTTACAAGATATTACACTATATTGTTTTAGAAGTCACCCATTCACAATGaacagaaatgcaaaaacacTGACTAAATAACATTCTCTTTTAAACTGCATTTGATCATGACGTGAGTTTTGGTCCATACTGCACTTTTAAAAGCTAACTTGCATGGGAAAATACCAAAGCAACCAGAACACAGCAATGTCACATTTTGCAGTGCAACAATGAGTATGAAATTTTGACAGCTCTGCTTTCATCCATCTTGTAGCTGGTGTGCCATTCAGAGTGCCAAACGGGCTTCAGCCAGGAGCAGCTCTTTAAAGACTGAAGGTGCCTTCAGGGCAATCAACTATGTAAAACATTGCCAAGATGATCCTACAGCACACAGAATACAGCACAGGACAGTCGAACTGATTCAGCCTCTTCTTAACATTGTGTGCTCACTCAAAGAGGACTGCTTCACTTGCGGCAGGTCCGATGGGGCGTCTTCTTTTTtttttttttttaatctgtctctCACCTCCATGATATCAACTGCCTTTTTGTCCTCCAGAGGTTCCACAATGCTCTCTCGCCAAGAAGGGACTAAAATGGGAAAAAAGGGACACAAGCCAACAAGAATTACAAAGTTATTTTTTCTGCTGTTATTTTGTTAGATGCCTTTACAATTTGCCTAGATTTTGGGCAATTACATGTCTCCACATTAACATATAGGAGCATTCCCTCACATGCTCAGAGCAAAGCTACATACTATCCTGAATGTCAACCAATTTTTGTTGTTACTGGATCGATATCCTGAACATCCATGAAACCCACCAGGCTTACATTCAAATAGTTTTGATTAGCAttggaaagaaaaatacattttaagacAGGATATAGATTTTAATGGACTAAAAGACATCAAtacttcaaataaataataatctggAAAAAATAATCAAGCAAGCTGCAATaacgtgtgtgatgtgtgttaacTATGTTCAAAGTGCACTCACCAGCAACTGTGTCCTCCTGCACAGGAGACTGATCTCTCCATGGTGAAGGTGGAGGTTGGTGCCAGCAGCAGAGATACATCTCAGTGGTAGCCATGTACGGCAGCTCTTCTGATTCTACAAGGGAGGAACCAGGTGACCTTACCTCAGGCTCCACCTCCTCCTGAGACTCCTCCAGAGCCTGGCTTTCTTTTGGAGCGGGTGCTTTAGTATGCCTACGTTTGGACCTTGACATCGTGGATTCCTGAAAAAGGAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247084 lncRNA downstream 31710 9858759 ~ 9883197 (-) False LOC117599011
XR_004579453.1 lncRNA downstream 70486 9829627 ~ 9844421 (-) False LOC117599011
XR_004579454.1 lncRNA downstream 71484 9829627 ~ 9843423 (-) False LOC117599011
TU247082 lncRNA downstream 73169 9841027 ~ 9841738 (-) False LOC117599011
XR_003402943.2 lncRNA downstream 76495 9837250 ~ 9838412 (-) False LOC113528446
TU247174 lncRNA upstream 146448 10063977 ~ 10066356 (-) True G208649
TU247295 lncRNA upstream 269507 10187036 ~ 10187252 (-) True G208758
TU247314 lncRNA upstream 304181 10221710 ~ 10290885 (-) True G208771
TU247529 lncRNA upstream 424382 10341911 ~ 10342222 (-) True G208951
TU247554 lncRNA upstream 530207 10447736 ~ 10450540 (-) True G208964
XM_026917222.2 mRNA downstream 10513 9896866 ~ 9904394 (-) False nr1d1
XM_026917220.2 mRNA downstream 11653 9896866 ~ 9903254 (-) False nr1d1
XM_026917219.2 mRNA downstream 11654 9896866 ~ 9903253 (-) True nr1d1
XM_026916217.2 mRNA downstream 144989 9767867 ~ 9769918 (-) True hoxb13a
XM_026916726.2 mRNA downstream 173574 9737003 ~ 9741333 (-) True hoxb9a
XM_026916517.2 mRNA upstream 70587 9988116 ~ 10033085 (-) True ppp1r9ba
XM_026916760.2 mRNA upstream 124652 10042181 ~ 10061921 (-) False col1a1a
XM_026916761.2 mRNA upstream 124652 10042181 ~ 10061921 (-) False col1a1a
XM_026916759.2 mRNA upstream 124652 10042181 ~ 10061921 (-) True col1a1a
XM_026917099.2 mRNA upstream 204857 10122386 ~ 10134023 (-) True nags
XR_004579397.1 other downstream 183657 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 440429 9466480 ~ 9474478 (-) False copz2
TU246803 other downstream 495323 9409804 ~ 9419584 (-) False prr15la
trnac-gca_22 other upstream 467520 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 533967 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1514981 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1619031 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1648481 11566010 ~ 11566128 (-) True LOC113528658

Expression Profile