RNA id: TU247339


Basic Information

Item Value
RNA id TU247339
length 4229
RNA type TUCP
GC content 0.40
exon number 5
gene id G208781
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10349402 ~ 10781459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGACAGAAAGTCGATATTGCAAAAgaatatttattcttttcttatCGTCCGTTCCCGTAAAAGTGCATCAGATTTTACAGTAAGCAAAATTCATATTTAAGACAGGATACACAGCCGAGCTACATTCACAATCATCATTTTGGACAGTGTGCTGCATGGGAGGAAACTTCTCATAAGCATCggtataaaaattatttatagtcAGATGAACATGGGAGGTCTCGGGCAAAGTTGTTCCTTCAGAGCGAGAAGTAGTGTTTGTTGGTCAGAAGCATTTTATGCCTTAACCAGGCTAGCGAACTCCATCAACTCCAATCTTGCCGTCACCGTCGGTGTCTCCAGCCTTGAGGAAAATCTTGGTCTCGTTGTCGGTGAGTGCCCTCGCATCCGATTTGAAGTTCTGCAGGAACAGTCTGTGGAGAGAGCATTATTATGTTTGTTATTGgtattattatgcattattacaGCTAAAACAGAGCTTTCTATCAGTACATTGCAAACTAATGAACTAATTTCTCTTTACTTCAGTTCATCCTCCTCAATGAAGCCGCTCTTGTCCTGATCAATGATGGAGAAAGCCTTCTTGACGTCATCAGCAGACTTGCCAGTCAGACCGACCTTAGTGAAGAAGGCCTTGTGGTCAAAGGAGCCATCGGcTTGCATGCATCCAGGGCTGCAGCGATATCAGCATCGTTGAGGACACCAGCGAATGCCATCTTTAGCTaagtgagggggaaaaaaacccattaACATTAGCATCATGGTTGACAtcataaaaacatgcaaactaATATGCATATGACATCAGTGATTGCCCTGAGTCTGGCCATGATCACGTCCTCTTAACCCTCTTTATGCAATGCATATTCAATTTGGCCTTGAGGAATCATTAGTTGCACCAACcagtttaatttttcttttctgttttaattcacTCGCTATCAGTTAGGCTGATTTTCTGTCACAAGCTCAGTGATGCGATCAAGTCGACCCAAGACAGCACAAAGCAACAGGTGCAAAGCTAATGCATGTCACATCCAGGTCACATGGTCATCATTAGGATGTTAGATCCCATCCAGTAGGCTATGTCCAACAGGATTGGGGACGATGTGATCCGAACCAGGGTAGAGGTAGAGAAATTCTCTTTCACATCCATGGTAAGTCCAGTGGAAAGGATTTAGAAgcagtgcaatttttttttttagaaaaatagaTGATCAGATAGGCTTTGATAAGGGTCTGTTGCAAATGCATTGCAGGTCCTGTGtcagagttgttgtttttttcctctcttgctGCTGTCCCTCGCTGCATGCAAACTCAcctcttttgtctttttggtGGTGAGCTGTAGATTCTCAAAGACTGGAGCAAACTGCAGTGAACTCCGGCCCGGTGCTCTCAACCTTATATACTTTCACACAGTCCAAATATGAGGCCTAATGTAACAGACACCCAATGGAAGAAGGGGGGTGCACTTGAAATGTGTCCAGCAGACAGACTGCACTATATTTATCTTGGTCAAGGAAGACGCTTAAATGGTGAGTTTGAAAAAAGCAGTCAGTAATGTCCTGCAATGCTAATAATATACGCTGCTGAGCCGCATGAAACAGCGCTGGTGTGAAGTGCATGTATGGATAACAGCGTGCTCGCATAGGGCTCATCTCATTTCGCCCATACGAAACTCACTAGTGCCTTACTACAAGTTATCTTCAAGACAGTGTTAAGGTATGCAATGCAGCTTTATGTTTACACTAAATAACACTTATAGTCTATAGGCCTGagagtaagatttttttttttttggtagtcatagttttttttttaacacactttagCAGTCCACATTTTGCAAAAAGAATAATCTTTTACTTGCTATAAATtgcctaattatttttcttattatttattaactaatGATTTAGCTAGCATATGTATTAATGTTCTGTATTACTTTGTCTAAATACTAGCATATCCAGTTATCTAACTGTAACATGTGAGACTACTGTCAAATCAGGCTGACTtgaacattaataaaatttatggATCCTTCGAGTGTTCTTCCTTTCCCATTCCATAATGTATTACCATGTTTTTCTATTTATCTTTCTCATAGAAATTCAAagtattctttaaaatattaatttcttcCAGTAAGTTCATTCTGTGATTTGCTTTACTTTGGTCCCAAAAATCACAAATGGAAAAGCTATTAAAATAAGTAGAATCAGAGAATCTAATTTGGATTTTGTTTCAATGAAGGAAATAGCAAGCTTGATGTTTTACACAGCAGAGGGCAGCACTATTCCATCTGACCAATATGGGAAGCCATCAATACTAACTGGATAGTGCTGCTGGATGCATGTCATAAACTGTCCTTTGTAAATCCCTTGCAATGCAACCCCACCCccccactcaaaaaaaaaaaaaaaactgggccTTCCCTCTGTGACTAAAGTACCATGTCTGGCTTTTTCTTTAAGAGCACCACTACCCTGAAAGCTTTTTGATAAGTGGCCCAGAACACCAAGTTGCAGTTTTTCAAAGTAGGTCAGTTGTCTTGCATTTGAGCAGAAAAAACCACTATGATCTTAAAGAAGTTACACCAATTACATTTATTCCTTGTTTTTCACTCTTCCCCAGAAGTACATCAGATTTGCACAAGCCAACATGTCCAGATAATGTTAACAATACACTTTAAGGACAATTTCAAGTAGAAGTCAGTTCataaataagatataaaaaatatgatcttaGGTCAGATGAGCAGTAGCATGAGTTCTGGTTCCGTGAACAGAGAAGGGTCTTGGTCAGATGGAAATTTAAGCCTTTACAAGAGCAGCGAACTCTGTGAGATAAAATAGAGATAAAACTACCATTAGTGAATTCTGCAAAACGATTCCCTTCATAGATACACtaaatgtatattttcaaaTGTTGAAGTTTATTGCtaactataaatatttataacttAGGCCCAAGCTAGCCAATGTCTGCACAGTCCAGAtgactttatgtaaacatttaccAACTAATTAATTAACTCCTTAGTACATTACTGAAGTTTTCTATGTCATGTgagtggtgtgttagtgtgtatcaAATTACCCTCAGCTCCGATCTTGCCGTCACCATCACTGTCACCAGCAGCAAGGAAGGTCTTGGTTTCTTTGTCGGTCAGTGCCCTGGCACCGCTCTTGAAGTTCTGCAGGAACAGCTCAGCTCATCCTCCTCAATAAAGCCACTGTTGTCCTGGTCAATGATGCCGAAAGCCTTCTTGACATCATCGGCAGACTTGGCGGACAGACCAACCTTGGCGAAGAAGGTCTTGTAGTTGAAGGAGTCAGGAGCTCGCAGGCAGCAATAGCTGCGTTCACATCAGCATCAGCCAGCACTCCAGCAAAGGCCATTTTTACTGATCAAGCTGCagaaaaaacagacaggaaGTTATTGGGACATTAGGCATCAGctcagaatgaatgaaatgccTGGTATGATGTCTAACAAATTTTCTATCTATAATATGTTAATTCTTTACTCAGCTTATTTCTACTGTCCAACTAATTGAATGACTGAATGCCCTCTCCTGTCCTTGCATGTACAATGAGAAGttctaattaaatttttttttaggtttgtattttataaaagaGCAACAGCTTCACAGAGGTCCTATTTAAGATGGCTTAAAATCAGATCTGTCATTTAGTTCAATATTTTGTAATGCAGGCTAGATCTTACACATGCAGCTAAGTCTGTGTCAGAGGTCAAGTGATATTCACTTGTGATGGGGCTCTAATAATTCATGGCCTTACTATTATAAGGGTCTATCTGGTTTAAGAATAAATGggagatagaaccttataatactaaggtcacaaAATGACAAAGATTACAAAACAGCATGCACATGGGCCTTGAAGGTTTTCCTTGGCAGTGTTCTCCTTAGTGAGCCCATCACCAATCCATTTCATGTACAAGAAaagtccatttttttctgacagcCCAGCACTAATGAAGAAACTCCTCAATCACTAGAATGTATTCCCGAAAAAGCTGTCCATTGACATTTTTTCCTGAAAACCACCACAAAATCCTAAACCCTCTGTATCCTGAAGACTCTTTGAACGCTGTTTGATTTTCTTGTCCATCTCACTCACCTTGTGCTTCTCTAAGGCGAGTGAAAAAGCAGAGGAAGTCGAGGTGTGTCCCTTCACCCTCTTCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247342 lncRNA upstream 70760 10341908 ~ 10342224 (+) True G208783
TU247238 lncRNA upstream 186481 10225583 ~ 10226503 (+) True G208701
TU247237 lncRNA upstream 191445 10221283 ~ 10221539 (+) True G208700
TU246974 lncRNA upstream 351019 10039409 ~ 10061965 (+) True G208488
TU247485 lncRNA downstream 409144 10827025 ~ 10828913 (+) True G208911
TU247490 lncRNA downstream 437274 10855155 ~ 10857015 (+) True G208916
TU247664 lncRNA downstream 514178 10932059 ~ 10932428 (+) True G209067
TU247667 lncRNA downstream 525374 10943255 ~ 10947541 (+) True G209069
XR_004579343.1 lncRNA downstream 553840 10971721 ~ 10982090 (+) True LOC117598771
XM_026916301.2 mRNA upstream 71269 10298887 ~ 10341715 (+) True helz
XM_026916903.2 mRNA upstream 190110 10215045 ~ 10222874 (+) True LOC113528384
XM_026916863.2 mRNA upstream 217778 10192804 ~ 10195206 (+) True LOC113528352
XM_026916700.2 mRNA upstream 425211 9944306 ~ 9987773 (+) True rapgefl1
XM_026916963.2 mRNA upstream 486781 9917962 ~ 9926203 (+) True casc3
XM_026916197.2 mRNA downstream 8178 10426059 ~ 10448685 (+) True lmtk2
XM_026916198.2 mRNA downstream 8178 10426059 ~ 10448685 (+) False lmtk2
XM_026916762.2 mRNA downstream 57473 10475354 ~ 10484206 (+) True bri3
XM_026917195.2 mRNA downstream 330265 10748146 ~ 10798178 (+) True fam20ca
XM_034310092.1 mRNA downstream 391573 10809454 ~ 10846584 (+) False LOC113528286
XR_003402918.2 other upstream 433030 9944306 ~ 9979954 (+) False rapgefl1
TU246534 other upstream 1349669 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 1510307 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 2404717 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 2559475 7853191 ~ 7853509 (+) True G207480
XR_003402977.1 other downstream 1119166 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 1149238 11567119 ~ 11577823 (+) False luc7l3
XR_003402925.2 other downstream 1740825 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 3057947 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 5395361 15813242 ~ 15813331 (+) True trnar-ucu_8

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU583924 False 1319 lncRNA 0.40 4 CI01000351 1700908 ~ 1702944 (+)