RNA id: TU247667


Basic Information

Item Value
RNA id TU247667
length 923
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G209069
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10943255 ~ 10947541 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttatttaaaatcttcaATGACTATGACAATAAAGAGCACAAGATTCTTCTTTCTGGAACATGATATAAAAAGGCAAAGCATGTCCTTTAGAATAGTACATACAATTAAATGACGTACAGCTTAATTCTAGCTGTTGACAGAGAGACCTGGTTCCTGCTTGCTCTCGTTCAACACAGCCACACCATTCAGGACTGTATACAGAGACTGTGACACTTTGATCCCTTACTGATCAGCGTGATCAGCTTGCGTTGGTCAGAATACAGGAAGTGGCCCCTGCAGCCTTGGCAGGAGCAACTGTGGAAATGTCcacatcatcctcatcatctgAGCTCTCATCACTGGATACATGACCCCTGTTTTTGACCCCGTTCACACCCCTTTCTTTGGTGCTGACACCTTTCAAGGCACTGACACTGTCATTGTCGCTGTTCTCTGAGTTTTCTTCGCTGCTGTCCGCTTCCTCCACGTCATCGCTATTGTCGGCGTTCTCCCGCTGTCTACTCGGTTTCTGCTGCCCTGGCTGCCTGTCTAGTATGAATATGTCCTGAGGACTGGTGTCCATCTCTTCTCCCTGTAGTTCCCCACTGTCTTTGCTTCCCGTCACTCGCATCTTCTGCCACATGTAATCCAGGAACATGGAGGCCTGGAGCATACGGCCAATCCTCTGCATGTGTCTCTCAGTATAAGGGATGAGGCCCTCTAGATGAGTGCGCGCTCCCTGGAACTGCAGCAGCTCGTCTGGGCTCAGGTGAGTCAGCAGCACCTGTAACACTGCCTGGGCACTCAGACAGCTCCGTGCGTTCGTGTTCCACACCACACAGTATCGCAGCAGAGACTCTGAACATACAAGCACATGACCAAGTCACTAGATGATTTCCTATAAACCTGAACATAATAACTGTCAGGTTCATATTAGCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247664 lncRNA upstream 10827 10932059 ~ 10932428 (+) True G209067
TU247490 lncRNA upstream 86240 10855155 ~ 10857015 (+) True G208916
TU247485 lncRNA upstream 114342 10827025 ~ 10828913 (+) True G208911
TU247335 lncRNA upstream 161796 10372415 ~ 10781459 (+) False G208781
TU247330 lncRNA upstream 525374 10372415 ~ 10417881 (+) False G208781
XR_004579343.1 lncRNA downstream 24180 10971721 ~ 10982090 (+) True LOC117598771
XR_004579342.1 lncRNA downstream 24180 10971721 ~ 10982078 (+) False LOC117598771
TU247679 lncRNA downstream 24439 10971980 ~ 10982293 (+) False LOC117598771
TU247909 lncRNA downstream 332539 11280080 ~ 11378800 (+) True cdc42ep4a
TU248035 lncRNA downstream 670494 11618035 ~ 11618234 (+) True G209390
XM_026916801.2 mRNA upstream 2256 10937303 ~ 10940999 (+) True noxo1a
XM_026917293.2 mRNA upstream 23277 10911457 ~ 10919978 (+) True gid4
XM_034310142.1 mRNA upstream 33448 10901036 ~ 10909807 (+) False drc3
XM_026916957.2 mRNA upstream 33450 10899639 ~ 10909805 (+) True drc3
XM_034310092.1 mRNA upstream 96671 10809454 ~ 10846584 (+) False LOC113528286
XM_026916187.2 mRNA downstream 15434 10962975 ~ 10966262 (+) True LOC113527977
XM_026916793.2 mRNA downstream 37316 10984857 ~ 11006021 (+) False gas7a
XM_026916792.2 mRNA downstream 38483 10986024 ~ 11006021 (+) True gas7a
XM_026916454.2 mRNA downstream 83492 11031033 ~ 11072825 (+) True aatka
XM_026916456.2 mRNA downstream 116137 11063678 ~ 11072825 (+) False aatka
TU247340 other upstream 525374 10349402 ~ 10417881 (+) False G208781
TU247338 other upstream 525374 10372415 ~ 10417881 (+) False G208781
TU247339 other upstream 525374 10412984 ~ 10417881 (+) True G208781
XR_003402918.2 other upstream 963301 9944306 ~ 9979954 (+) False rapgefl1
TU246534 other upstream 1879940 9061565 ~ 9063315 (+) False nupr1b
XR_003402977.1 other downstream 589506 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 619578 11567119 ~ 11577823 (+) False luc7l3
XR_003402925.2 other downstream 1211165 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 2528287 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4865701 15813242 ~ 15813331 (+) True trnar-ucu_8

Expression Profile