Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU248037 |
| length | 570 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G209392 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 11633912 ~ 11634481 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU248035 | lncRNA | upstream | 15678 | 11618035 ~ 11618234 (+) | True | G209390 |
| TU247909 | lncRNA | upstream | 255112 | 11280080 ~ 11378800 (+) | True | cdc42ep4a |
| TU247679 | lncRNA | upstream | 651619 | 10971980 ~ 10982293 (+) | False | LOC117598771 |
| XR_004579343.1 | lncRNA | upstream | 651822 | 10971721 ~ 10982090 (+) | True | LOC117598771 |
| XR_004579342.1 | lncRNA | upstream | 651834 | 10971721 ~ 10982078 (+) | False | LOC117598771 |
| TU248059 | lncRNA | downstream | 74247 | 11708728 ~ 11708936 (+) | True | G209410 |
| XR_003402931.2 | lncRNA | downstream | 173780 | 11808261 ~ 11822910 (+) | True | LOC113528367 |
| TU248481 | lncRNA | downstream | 385382 | 12019863 ~ 12021132 (+) | True | G209775 |
| TU248507 | lncRNA | downstream | 427088 | 12061569 ~ 12061782 (+) | True | G209798 |
| TU248505 | lncRNA | downstream | 450647 | 12085128 ~ 12086009 (+) | False | tbc1d16 |
| XM_026916066.2 | mRNA | upstream | 239 | 11626282 ~ 11633673 (+) | True | gcat |
| XM_026917186.2 | mRNA | upstream | 32500 | 11578560 ~ 11601412 (+) | True | si:ch73-281f12.4 |
| XM_026917192.2 | mRNA | upstream | 56089 | 11567119 ~ 11577823 (+) | True | luc7l3 |
| XM_026917191.2 | mRNA | upstream | 56089 | 11567120 ~ 11577823 (+) | False | luc7l3 |
| XM_026916035.2 | mRNA | upstream | 73083 | 11538334 ~ 11560829 (+) | False | unm_sa1261 |
| XM_034310071.1 | mRNA | downstream | 844 | 11635325 ~ 11642057 (+) | True | mcm5 |
| XM_026916691.2 | mRNA | downstream | 13668 | 11648149 ~ 11657127 (+) | True | foxred2 |
| XM_034310072.1 | mRNA | downstream | 13795 | 11648276 ~ 11657127 (+) | False | foxred2 |
| XM_026916026.2 | mRNA | downstream | 23048 | 11657529 ~ 11662120 (+) | True | ankrd54 |
| XM_026916497.2 | mRNA | downstream | 27740 | 11662221 ~ 11671601 (+) | False | hmgxb4a |
| XR_004579334.1 | other | upstream | 56089 | 11567119 ~ 11577823 (+) | False | luc7l3 |
| XR_003402977.1 | other | upstream | 96747 | 11537047 ~ 11537165 (+) | True | LOC113528662 |
| TU247340 | other | upstream | 1216031 | 10349402 ~ 10417881 (+) | False | G208781 |
| XR_003402925.2 | other | downstream | 524225 | 12158706 ~ 12188589 (+) | False | arhgap17b |
| XR_004579399.1 | other | downstream | 1841347 | 13475828 ~ 13492850 (+) | False | zgc:158403 |
| trnar-ucu_8 | other | downstream | 4178761 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| TU251011 | other | downstream | 4283736 | 15918217 ~ 15968759 (+) | True | G211913 |
| TU251142 | other | downstream | 4505849 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
