RNA id: TU248059


Basic Information

Item Value
RNA id TU248059
length 209
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G209410
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11708728 ~ 11708936 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaattattattattgacccttattgagactccttccttaaatgttaaataaatgtcttttttcagAATGCTTCACCTGatcaattattatttgttttatcttgttaaataacacattaaaaattccatttatttatcaatttatattCATCGTACAAGTACCTgtgaactgggtcactgggcaGGAACCTAAGCAGGGCCCCCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248037 lncRNA upstream 74247 11633912 ~ 11634481 (+) True G209392
TU248035 lncRNA upstream 90494 11618035 ~ 11618234 (+) True G209390
TU247909 lncRNA upstream 329928 11280080 ~ 11378800 (+) True cdc42ep4a
TU247679 lncRNA upstream 726435 10971980 ~ 10982293 (+) False LOC117598771
XR_004579343.1 lncRNA upstream 726638 10971721 ~ 10982090 (+) True LOC117598771
XR_003402931.2 lncRNA downstream 99325 11808261 ~ 11822910 (+) True LOC113528367
TU248481 lncRNA downstream 310927 12019863 ~ 12021132 (+) True G209775
TU248507 lncRNA downstream 352633 12061569 ~ 12061782 (+) True G209798
TU248505 lncRNA downstream 376192 12085128 ~ 12086009 (+) False tbc1d16
TU248585 lncRNA downstream 424324 12133260 ~ 12133471 (+) True G209863
XM_026916500.2 mRNA upstream 31267 11671706 ~ 11677461 (+) True si:dkeyp-69e1.8
XM_026916497.2 mRNA upstream 37127 11662221 ~ 11671601 (+) False hmgxb4a
XM_026916498.2 mRNA upstream 37127 11662221 ~ 11671601 (+) False hmgxb4a
XM_026916499.2 mRNA upstream 37127 11662221 ~ 11671601 (+) False hmgxb4a
XM_034310073.1 mRNA upstream 37127 11662428 ~ 11671601 (+) True hmgxb4a
XM_026917171.2 mRNA downstream 30684 11739620 ~ 11743073 (+) True s1pr5a
XM_034309876.1 mRNA downstream 121107 11830043 ~ 11848621 (+) False rfx1a
XM_034309875.1 mRNA downstream 121108 11830044 ~ 11850336 (+) False rfx1a
XM_034309877.1 mRNA downstream 121108 11830044 ~ 11848621 (+) False rfx1a
XM_034309878.1 mRNA downstream 121109 11830045 ~ 11848621 (+) False rfx1a
XR_004579334.1 other upstream 130905 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 171563 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1290847 10349402 ~ 10417881 (+) False G208781
XR_003402925.2 other downstream 449770 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1766892 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4104306 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 4209281 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4431394 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile