RNA id: XR_003402938.2


Basic Information

Item Value
RNA id XR_003402938.2
length 1379
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC113528410
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11218659 ~ 11221378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCCTAAGAACGCACCAACCCAGGGCCAAGGCTGAGTATTTTGGTTGTTTCGTGATTTAAAGAGAATCAGTGCCCTAAAGAGTAACTCTATCAGCACGGAAAAGCTATGAAGGATTTTTTCTGGTTCATTTGGAGCACATTTGAAGGGTGAAAAAGAAGACAGAGGAAGCTTGAGAGACTCGAGCCTGGACACTAGCCATGGAGGAGGATTATATGAAGAACAGTCACCCTGATGTCATAAGGCAGCAGCACATGAGCAACGTGGATAAGGGCTACTCTGAGAGCAAGCGTGCCGATTCGGGGCCAAATGGTTGCATGCGGTGCTGCATGAGTACCAAGAAATGCCTGATGAGCCCAGAATGTGGCAGAGCACTCAGCATCGCTAATGTCATCGCCATGTGTGGCATGTGTATCCGGATGTGGACGTagATGTCTACTGCTTCTGAATCAAGAAAAGCTTGTCTCCTGGTGGCTGCCGCCCTGAACTTAGAACAATAGGAGGCATCATGATTATGGAATCTCTACTAAACCTTTACTAAACAACCATTATAACACACCCTTAGGTTGaactccattttattttatcacctctatcaataataatatatctTTGAAAACACGGCCAACATTGCAGCATATCTGTAagtaaacaattttaaatagGAGAAAGggtaatgaaaatgtaatgtaaaaaatgattCTCCGAATGGATGAAtaacattaatttttaatgtataaaacatGTCAAGGATGTTACATGGATGCCATCCTCAGGTCTCTGTCTTCCCTCAGCTGCTCTGTCTTAGCATTTGTAGAAGTGACTGAGTGCCTGCAGGTGAACAATCAGAAAAACCCAGACCTTGATTTTAACAATCCACCACTTTATGCCTCAACAAAAACCCTGGGTATTAGATACTTTTAGCTCAGAACAGTGCTGTGAAGGGTGATTTTTCAACTACTTTCTGCTACAGATTATTCAGTGCCGCTCTACGATTGTCATCTGCAGCTAAAGTAATTAAACTGAAAAGACTGGTAGTACTGGAGGTCATgttcatttagtcatttagtgtttaattttcattttgttgaCAATTTTTCATGGTTAATTACCGTAAATCAGTTAAGTAAGTTAATCATTTGAAGTGTCTTCCCCCACAATTGTAATgctttttatttgcatatgagTAATGAAGAATAGTTGCCTTTTTGGAATTCTCAACACATAACCTCATGTATTCTATTATTCTCATAACTGATTATGAACTAACTAAAACACTTGTCGTTTTTCTAAATTTcacaaatttcacaaaaaagtGACATTTCTGACTTTGATTTACTGCTCTCTGCTCttcaaaatacaaagaaaacatgatACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247803 lncRNA downstream 73675 11089013 ~ 11144984 (-) True G209189
TU247589 lncRNA downstream 584509 10633535 ~ 10634150 (-) True G208998
TU247571 lncRNA downstream 699712 10518342 ~ 10518947 (-) True G208980
TU247554 lncRNA downstream 768119 10447736 ~ 10450540 (-) True G208964
TU247529 lncRNA downstream 876437 10341911 ~ 10342222 (-) True G208951
TU248181 lncRNA upstream 167582 11388960 ~ 11389231 (-) True G209529
TU248190 lncRNA upstream 179344 11400722 ~ 11401423 (-) True G209538
TU248193 lncRNA upstream 181700 11403078 ~ 11405775 (-) True G209541
TU248194 lncRNA upstream 181700 11403078 ~ 11476796 (-) False G209541
TU248206 lncRNA upstream 310198 11531576 ~ 11535697 (-) True G209553
XM_026917208.2 mRNA downstream 27144 11154915 ~ 11191515 (-) True ttyh2l
XM_034310290.1 mRNA downstream 27425 11154915 ~ 11191234 (-) False ttyh2l
XM_026917210.2 mRNA downstream 33909 11154915 ~ 11184750 (-) False ttyh2l
XM_026916804.2 mRNA downstream 66496 11147394 ~ 11152163 (-) True LOC113528317
XM_034310022.1 mRNA downstream 72827 11074517 ~ 11145832 (-) True baiap2a
XM_026916043.2 mRNA upstream 204907 11426285 ~ 11438335 (-) True hs3st3b1a
XM_026916453.2 mRNA upstream 271897 11493275 ~ 11495487 (-) True LOC113528102
XM_026916933.2 mRNA upstream 288353 11509731 ~ 11518087 (-) True LOC113528402
XM_026917058.2 mRNA upstream 299388 11520766 ~ 11529442 (-) True slc16a5b
XM_026916692.2 mRNA upstream 420779 11642157 ~ 11645770 (-) False hmox1a
XR_003402902.2 other downstream 748141 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 833539 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 1487409 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 1744181 9466480 ~ 9474478 (-) False copz2
TU246804 other downstream 1799075 9413601 ~ 9419584 (-) True prr15la
XR_003402978.2 other upstream 211132 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 315182 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 344632 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 478528 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 534447 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile