RNA id: TU248193


Basic Information

Item Value
RNA id TU248193
length 2599
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G209541
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11403078 ~ 11476796 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATTCTGtattattcacttatttatttttaaaatcttattaaaaaagcatacagaacaaaaacaattaGCTTTTGAAAGGATATTTTGGCACACATACAATAcacaatgtaaaataattttgctCAAATTAACAGACTTTGAGCTTATAGGTATATCTAGCTATTAACTGaaggcaaaacaaaaacatagcaccatttcactatttaaaaacatgaacagaacaaaaattttaaaaatctttttggtTTATCACATAAAAATAAGCACAATTTCATCATACAATCATTGTGAAATTGGATTTTAAGAATGTATTTCTATTAGATACAAGCTATGGAGTAAAACACACAAGGATAAAAATGATCTTTATACTGTCTTCTTTGTGGTCAGCTTCAAAATATGGACCTTCATCAAAAATGTTTCAACATTCATATGTACAAAAACTATGTAAAAGTGATATAAATAGTATCACAAACCACAGACCCGTCCTCACTGAGTCGTCATTGAGTTGGATCTTCATGATTTGTCACTTTTGCATGATCACACATTTGGCATTGTTATACAGGCCAGCAGGAAAAGGCCATTTGGGTCTGTGGACTGAGTGTCATTCTCAGTGATGTCAGCGGGGGTCTCTCCACTGATCCTTCATTCCTTCTTCCTCAGAATGATGTAAATGAGGCCGCTTATCAGAGTGAGAGGGAACGCCAGCCAGGCTAAGACAAAGGCAAAGCCAAACGAGTACCTCTCATCCTGCTGTTCTCGGCTCATCACTGTGTAGATAATAGCTCCACTCATCACAAATAGGCCTACAAGAGTGGAGAGGATCTGAAAGACAGCAGTGAAGAAGAATCGTCCTCCCTTGTTCAGGGTGAAGAGTTGCCAAATGAATAAGATCAAAGACAGCAGGCAGAAGATTGTGGCTAGGATCATCAGACCCTGTACTGCCTGCAGCCAGTCTAAAATAACAAACCGGGAGACCAAAATTAACCCTGGCATTCTGAACagtcttaatttatttatttttgacaaatgTCTTGCCTACCTGAGTTACTGACATCTTTGCAGTGATAGCCTCCATTTTCTGTTGTGCAGTCATACCAGAGGTTAAAAGTGCTTGCCTGAAATTTGCTCCAGGCCTtgattaaagaaataaagacaaacCCAGACATGCCCATCAGTTCAATAAATAACCTACACACCCTAATCAGGCATGGGGTGCAAAAAGAACATGGATACTCACATTCACAGATGTAGAAATGAACAGCAGAATCAGATCCAGAAGGTGCAATATGACTGTTCCGATCAGGACCACCAGCATGGTTGCGTTAACCTGTACCTGAGGCAAAAACAGAGGTAGCAGAATAGTTAGTAATtattagtatataatagtatgtggtttgggacagagTGCATTACAGGAGATAGACATCACCCCAGCAGTTCCCTCTATCTGGTGTATTAAAGGTCATTTTTACATGCAGTTTATTATCAGGACAGCAGGAGGCGCTCTGTTCTAACTATTGCAAGATGATCTTGGCCCCAGTGtgtatttcaaatttaaaaacttACTGCACATCTACGTTATAGTAACAACCAGAGGAGAAAACATCGCTGAAGAGATGTAAACACTTGAATACACATCCATTTAGCTTGGAAAAGATGCAGCAAGAGCAAGCAGGCTTCCAGGTTTGCATTCTGTCGCACTGAGAAAAAACTTGTAAACAAGTAGGTTCAAAATTCTCTGGAGAAAGTAGAGATTGATATGTAACAGATAGAGtattttttagatgtttctttttaaataaatagggTTTTTTAACCAGAGAGGTTGTTTTCCTCCACATTTGAGAGCAGGGCTTTGGGAATTGAGGCGTGGGCTACACGCAGCCCATCCGCTTAAAGCCAAGGATGCACTGCTCACATGCAACACAAACGCCTGGAAAAGTTACTGATTTGCGCAAAAGATGACAAAATAAAACCCTCACATCCAAAATCCTACTGCGATCAAAAGTAAACAATCTATTAATGACGCAGAAAGATTGTTCCATGATGAAAAATAACGGGAAGTCCCAGCTCCTGCGATGCTGATAATCCTTCAAATACGCATGTGACTGTTTTgaccaaaatgttaaaaaaaaactccaactTACGAGGTGAAGTGAAGAATCCTTGAAAAGAGCTAGAAAGAGGAGGCAGGAGAAAAACACCGAGCCACCTTTACTACGAGATCCTTGTATAGATTCCCCTAAACCACGGGCTCTGGATTCCAGATGTGGATTTtcttttgcctcttttttttcaggaacGTGAGAACACCGCCCTGCGCGCGCCTGTGCGTCACCACACACGCCTCTGCCTCCACACACACGTAGTGCACTGCAGGACTGGTCTACTACACTGTTTTGGTGCCTTATAGACTGCTCTCAGAGCAAAACGAGAACTTATTAAGATTTTATTGAGCAGTGGTGCAGTGTTTCGCTCGTGCTTTGTTTGGTgctggtgcaaaaaaaaaaatgcgttCAGACGCGCGCTCACACTTTATGTTTGGTTCAGGGGATTTGCGCTTGCATGGACTTTTGCAAACAGTAATTTACTTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248190 lncRNA downstream 1655 11400722 ~ 11401423 (-) True G209538
TU248181 lncRNA downstream 13847 11388960 ~ 11389231 (-) True G209529
XR_003402938.2 lncRNA downstream 181700 11218659 ~ 11221378 (-) True LOC113528410
TU248077 lncRNA downstream 181712 11218668 ~ 11221366 (-) False LOC113528410
TU247803 lncRNA downstream 258094 11089013 ~ 11144984 (-) True G209189
TU248206 lncRNA upstream 125801 11531576 ~ 11535697 (-) True G209553
TU248288 lncRNA upstream 194697 11600472 ~ 11601244 (-) True G209618
TU248294 lncRNA upstream 204859 11610634 ~ 11617188 (-) True G209624
XR_003402897.2 lncRNA upstream 213765 11619540 ~ 11626068 (-) True LOC113527962
TU248298 lncRNA upstream 213871 11619646 ~ 11625813 (-) False LOC113527962
XM_026917208.2 mRNA downstream 211563 11154915 ~ 11191515 (-) True ttyh2l
XM_034310290.1 mRNA downstream 211844 11154915 ~ 11191234 (-) False ttyh2l
XM_026917210.2 mRNA downstream 218328 11154915 ~ 11184750 (-) False ttyh2l
XM_026916804.2 mRNA downstream 250915 11147394 ~ 11152163 (-) True LOC113528317
XM_034310021.1 mRNA downstream 257246 11078461 ~ 11145832 (-) False baiap2a
XM_026916043.2 mRNA upstream 20510 11426285 ~ 11438335 (-) True hs3st3b1a
XM_026916453.2 mRNA upstream 87500 11493275 ~ 11495487 (-) True LOC113528102
XM_026916933.2 mRNA upstream 103956 11509731 ~ 11518087 (-) True LOC113528402
XM_026917058.2 mRNA upstream 114991 11520766 ~ 11529442 (-) True slc16a5b
XM_026916692.2 mRNA upstream 236382 11642157 ~ 11645770 (-) False hmox1a
XR_003402902.2 other downstream 932560 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 1017958 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 1671828 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 1928600 9466480 ~ 9474478 (-) False copz2
TU246804 other downstream 1983494 9413601 ~ 9419584 (-) True prr15la
XR_003402978.2 other upstream 26735 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 130785 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 160235 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 294131 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 350050 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile