RNA id: TU248298


Basic Information

Item Value
RNA id TU248298
length 2151
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id LOC113527962
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11619540 ~ 11626068 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCATTCACTCAATCCACAGCAAAGGTGCAGCGTCTCATGCATCTCATGTTTTGCTAATATAGTTGCAAAATTTAGAAATTTCGTGGCATTCATTTTAAAGGATGAATTTGGATTGTTTAGTTAGTTTTGTGAGTTGAGGGGGCTGAAGATGCATCtatgtaatacattttattcaacGCATTTTGGATGTTCCgctttgtatttaatttatttgaaaagcAGAAACAAATCGGATGACAATGAGGGGACGCTCTTTTGCTTGAAGTTCCCAGGTCCACTTGGATTCAATGCATGCTAGAAGCAGTCCTCCGAGTCCTCATGTGTGGCTGTGGAGAGTCAGGGGAAGATCAGGCTAATTTTCCTGTGCAGGAAACAACTCGGGCCTTGGAAACACCTATAAACCAGAGTTCTGTACGGCCCTGGTATTGAAGGATGTTTTTCCTGACGCATCACCCTGTCGACCACCAGTGAACCATTCAAGGGGGACCCAGTTGTAAGTTGTGCTGTTCAGGTTGCAATGCAGAGCACATCGGAGTCATCCTACTACATGTGCCTTCTGACTATTACACCTCTGCAAACTGTAATAACCTGAGTCACCTTCCATCACCAACAAATCTGGAAGAATTCCATCATGTGCTATGCAGGATATGTGCAAAATGTCCAGTGAAGTATGCCAAATTATGCCAACAGCTGTTGACACCAATGTATGAAATGATAGACATTCTGGAACATGAAAAAACATGGCATTGTCTTATGTCTTGCAGCTAGCAACAGAAAGGCTATGATGAATTTTTAGCTATGAGGTACTTTTATTTGAAAgcattgggctactgatcagaaggttgagagttcaaatcccagcaccatcaAGTGTGAGCCAATTAAGCAAAATGGAAAAGTACCAATGGCTGTATGTATCAGGGATATTAGTTAGGGTCTAGTTGAATAACATTCCTTTACAAACATCTATCAACTAACATTACTGAATGGTGGCAACTGTTACCCTTTAATGATTAGCCATTAATAATTAGTTCATTAGTACTTGGTTCAATCCAAAGATGGGGTCTTCAGTGGGTTATGACTATAACATTCTTTACTTACCCCCAACATTAGTTTTGCCTGGTGCATGCCATCTCAGAATAGTATTCaaaaaacaattaacaattacacattcTTCAGATATCTTCAGATACAGAGGTCACAGAAAATACGTGGATAGACTAACAGAAAACATGTGTCCCTTTTCTGTACATATGTAGATGTGCTTGGCAATTCTTGACATCATCTCACTGTCtgctttttttgcactttttatctGATAATGCAATTTCATTCTTGCACTtttataatgtacattttttgcttttacagTGTTTGCTGAATTTTAACTGTAGCACTTAATTCTATAGCATTTACTCACATTGTTTACCTGCATTAGTttttgttctgtaataaattttaAGGAATTAAGCTGGTTAATTTATATGGCCCTATTGCTGCAAATTGTCTTGATTTTAGACAAGTGTATTTGTGAAATTTTGCAGCAGTAAGGTGGCCTACCCATTgcattttgaggaaaaaagaaaatgcgaAATAATACTGTATTGATtgatgaatttttaattttcatgtttaattttatgttttcacCATCATTGTAAATTAAGCTTCTGTTTTCTGCTGCCCTTATTTATCCGTCctttattgtgtaaatatttgcgtAGGCCAAACTAAAAAACTAAACATAGAGCTAGATGCCTATGGGTACTGATGCACTGCGGttcttttgccatttttttgttgtcCTAATTCAATGGccttatttgttttcatttgtatttttaattttttttggtttgcttTAATTTAAATCTGAAATCACCGATTTTCACAAAAGCattaaatctgtgtgtaattgaaataaataaactatttaaagttgataatatattttatatataaaactgtgcaAACTCATGCAATCGGAAGTGAGTTTATTTATAgctaaatttacacaaaatctGGAACTCTCATAGAATACAAATAGTTTTCTGAAATAACTTGATTTTTATgaatactaattttttttatgtaatagcTCTGCaattcaaaaacaaatttgtttgtACCCAGGTTGATAAAAGAGGccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248294 lncRNA downstream 2458 11610634 ~ 11617188 (-) True G209624
TU248288 lncRNA downstream 18402 11600472 ~ 11601244 (-) True G209618
TU248206 lncRNA downstream 83949 11531576 ~ 11535697 (-) True G209553
TU248194 lncRNA downstream 142850 11403078 ~ 11476796 (-) False G209541
TU248193 lncRNA downstream 213871 11403078 ~ 11405775 (-) True G209541
TU248307 lncRNA upstream 16355 11642168 ~ 11647997 (-) True hmox1a
TU248316 lncRNA upstream 38672 11664485 ~ 11665129 (-) True G209646
XR_004579362.1 lncRNA upstream 219760 11845573 ~ 11879417 (-) True LOC117598828
TU248548 lncRNA upstream 442441 12068254 ~ 12068622 (-) True G209829
TU248549 lncRNA upstream 443000 12068813 ~ 12069180 (-) True G209830
XM_026917058.2 mRNA downstream 90204 11520766 ~ 11529442 (-) True slc16a5b
XM_026916933.2 mRNA downstream 101559 11509731 ~ 11518087 (-) True LOC113528402
XM_026916453.2 mRNA downstream 124159 11493275 ~ 11495487 (-) True LOC113528102
XM_026916043.2 mRNA downstream 181311 11426285 ~ 11438335 (-) True hs3st3b1a
XM_026917210.2 mRNA downstream 434896 11154915 ~ 11184750 (-) False ttyh2l
XM_026916692.2 mRNA upstream 16344 11642157 ~ 11645770 (-) False hmox1a
XM_026916973.2 mRNA upstream 74036 11699849 ~ 11701172 (-) True zgc:162612
XM_026916218.2 mRNA upstream 119678 11745491 ~ 11751424 (-) False spc24
XM_026916219.2 mRNA upstream 119678 11745491 ~ 11751402 (-) False spc24
XM_034309686.1 mRNA upstream 119678 11745491 ~ 11751375 (-) True spc24
XR_003402973.1 other downstream 53518 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 82968 11536560 ~ 11536678 (-) True LOC113528647
XR_003402978.2 other downstream 187018 11432510 ~ 11432628 (-) True LOC113528663
XR_003402902.2 other downstream 1149128 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 1234526 10385049 ~ 10385120 (-) True trnac-gca_22
TU248329 other upstream 74093 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 130012 11755825 ~ 11755923 (-) True LOC113528652
XR_003402971.1 other upstream 399689 12025502 ~ 12025572 (-) True LOC113528656
TU248755 other upstream 674192 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 708045 12333858 ~ 12339269 (-) True msrb1a

Expression Profile