Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU248316 |
| length | 645 |
| lncRNA type | inter_gene |
| GC content | 0.53 |
| exon number | 1 |
| gene id | G209646 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 11664485 ~ 11665129 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU248307 | lncRNA | downstream | 16488 | 11642168 ~ 11647997 (-) | True | hmox1a |
| XR_003402897.2 | lncRNA | downstream | 38417 | 11619540 ~ 11626068 (-) | True | LOC113527962 |
| TU248298 | lncRNA | downstream | 38672 | 11619646 ~ 11625813 (-) | False | LOC113527962 |
| TU248294 | lncRNA | downstream | 47297 | 11610634 ~ 11617188 (-) | True | G209624 |
| TU248288 | lncRNA | downstream | 63241 | 11600472 ~ 11601244 (-) | True | G209618 |
| XR_004579362.1 | lncRNA | upstream | 180444 | 11845573 ~ 11879417 (-) | True | LOC117598828 |
| TU248548 | lncRNA | upstream | 403125 | 12068254 ~ 12068622 (-) | True | G209829 |
| TU248549 | lncRNA | upstream | 403684 | 12068813 ~ 12069180 (-) | True | G209830 |
| TU248551 | lncRNA | upstream | 405167 | 12070296 ~ 12070602 (-) | True | G209832 |
| TU248558 | lncRNA | upstream | 411543 | 12076672 ~ 12077073 (-) | True | G209839 |
| XM_026916692.2 | mRNA | downstream | 18715 | 11642157 ~ 11645770 (-) | False | hmox1a |
| XM_026917058.2 | mRNA | downstream | 135043 | 11520766 ~ 11529442 (-) | True | slc16a5b |
| XM_026916933.2 | mRNA | downstream | 146398 | 11509731 ~ 11518087 (-) | True | LOC113528402 |
| XM_026916453.2 | mRNA | downstream | 168998 | 11493275 ~ 11495487 (-) | True | LOC113528102 |
| XM_026916043.2 | mRNA | downstream | 226150 | 11426285 ~ 11438335 (-) | True | hs3st3b1a |
| XM_026916973.2 | mRNA | upstream | 34720 | 11699849 ~ 11701172 (-) | True | zgc:162612 |
| XM_026916218.2 | mRNA | upstream | 80362 | 11745491 ~ 11751424 (-) | False | spc24 |
| XM_026916219.2 | mRNA | upstream | 80362 | 11745491 ~ 11751402 (-) | False | spc24 |
| XM_034309686.1 | mRNA | upstream | 80362 | 11745491 ~ 11751375 (-) | True | spc24 |
| XM_026917283.2 | mRNA | upstream | 87914 | 11753043 ~ 11763823 (-) | True | kri1 |
| XR_003402973.1 | other | downstream | 98357 | 11566010 ~ 11566128 (-) | True | LOC113528658 |
| XR_003402963.1 | other | downstream | 127807 | 11536560 ~ 11536678 (-) | True | LOC113528647 |
| XR_003402978.2 | other | downstream | 231857 | 11432510 ~ 11432628 (-) | True | LOC113528663 |
| XR_003402902.2 | other | downstream | 1193967 | 10451496 ~ 10470518 (-) | False | tecpr1b |
| trnac-gca_22 | other | downstream | 1279365 | 10385049 ~ 10385120 (-) | True | trnac-gca_22 |
| TU248329 | other | upstream | 34777 | 11699906 ~ 11701101 (-) | False | zgc:162612 |
| XR_003402968.1 | other | upstream | 90696 | 11755825 ~ 11755923 (-) | True | LOC113528652 |
| XR_003402971.1 | other | upstream | 360373 | 12025502 ~ 12025572 (-) | True | LOC113528656 |
| TU248755 | other | upstream | 634876 | 12300005 ~ 12315469 (-) | False | LOC113528332 |
| TU248759 | other | upstream | 668729 | 12333858 ~ 12339269 (-) | True | msrb1a |
