Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU248481 |
| length | 1163 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G209775 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 12019863 ~ 12021132 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003402931.2 | lncRNA | upstream | 196953 | 11808261 ~ 11822910 (+) | True | LOC113528367 |
| TU248059 | lncRNA | upstream | 310927 | 11708728 ~ 11708936 (+) | True | G209410 |
| TU248037 | lncRNA | upstream | 385382 | 11633912 ~ 11634481 (+) | True | G209392 |
| TU248035 | lncRNA | upstream | 401629 | 11618035 ~ 11618234 (+) | True | G209390 |
| TU247909 | lncRNA | upstream | 641063 | 11280080 ~ 11378800 (+) | True | cdc42ep4a |
| TU248507 | lncRNA | downstream | 40437 | 12061569 ~ 12061782 (+) | True | G209798 |
| TU248505 | lncRNA | downstream | 63996 | 12085128 ~ 12086009 (+) | False | tbc1d16 |
| TU248585 | lncRNA | downstream | 112128 | 12133260 ~ 12133471 (+) | True | G209863 |
| TU248587 | lncRNA | downstream | 115641 | 12136773 ~ 12139867 (+) | False | LOC113528416 |
| TU248618 | lncRNA | downstream | 180106 | 12201238 ~ 12202277 (+) | True | G209884 |
| XM_026917084.2 | mRNA | upstream | 100200 | 11861586 ~ 11919663 (+) | True | grin2ca |
| XM_034309875.1 | mRNA | upstream | 169527 | 11830044 ~ 11850336 (+) | False | rfx1a |
| XM_034309874.1 | mRNA | upstream | 169527 | 11830046 ~ 11850336 (+) | True | rfx1a |
| XM_026916683.2 | mRNA | upstream | 169527 | 11830060 ~ 11850336 (+) | False | rfx1a |
| XM_026916688.2 | mRNA | upstream | 169527 | 11830063 ~ 11850336 (+) | False | rfx1a |
| XM_026917101.2 | mRNA | downstream | 12754 | 12033886 ~ 12045504 (+) | True | gaa |
| XM_026916961.2 | mRNA | downstream | 28275 | 12049407 ~ 12086058 (+) | True | tbc1d16 |
| XM_026916598.2 | mRNA | downstream | 95307 | 12116439 ~ 12122136 (+) | True | cbx4 |
| XM_026916600.2 | mRNA | downstream | 108459 | 12129591 ~ 12132297 (+) | True | cbx8a |
| XM_026916951.2 | mRNA | downstream | 114137 | 12135269 ~ 12140371 (+) | True | LOC113528416 |
| XR_004579334.1 | other | upstream | 442040 | 11567119 ~ 11577823 (+) | False | luc7l3 |
| XR_003402977.1 | other | upstream | 482698 | 11537047 ~ 11537165 (+) | True | LOC113528662 |
| TU247340 | other | upstream | 1601982 | 10349402 ~ 10417881 (+) | False | G208781 |
| XR_003402925.2 | other | downstream | 137574 | 12158706 ~ 12188589 (+) | False | arhgap17b |
| XR_004579399.1 | other | downstream | 1454696 | 13475828 ~ 13492850 (+) | False | zgc:158403 |
| trnar-ucu_8 | other | downstream | 3792110 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| TU251011 | other | downstream | 3897085 | 15918217 ~ 15968759 (+) | True | G211913 |
| TU251142 | other | downstream | 4119198 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
