RNA id: XM_026916961.2


Basic Information

Item Value
RNA id XM_026916961.2
length 7755
RNA type mRNA
GC content 0.46
exon number 12
gene id tbc1d16
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12049407 ~ 12086058 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGAATGATAATTAACACTCCGGGCTGGTGGATACACTTTTTTGCTTTGTTCACTTTGCGCTGGCTGTTTTAATGAATTGGCGGGTTTTGGCCAGTTTATGGATTGGAAATAGGCAagccaatctggcaaccctgtcagcAGCCAGCAATGTGCCAGCTGAAGTCCTGTGAATAAACACACGCACTCCGGAGGGTGCAGGAACATTTAGCACAGTCCTGTGAATGTCATTTTACTGACGAGGACGATTTGCGGGATGGACGAGCGGTGAATATCGTCATTTCCTTACGGGCTGAAGAGGATGGGAGCAGTAGCCAGGCACTGGAGATGTCATTCGGTCGGCTCCTGCGGCGTGCTTCATCCAAAGCCTCTGACCTCTTGACCTTCAATGCGGGCTCGGCGGGGTCACGGTCCGTGCAGGACGGGGAGATCATATTCTCCAAGAACAACGTGTGTGTGCACCCGGCCGAGCCCGTGCCCGGCCTGCCCGAGCATCACCCAGGTTACTTGTGTGTCCACCTGGAGAAGGACGAGACTCTGGGCTCTACTCTCATCCTCACCTGGGTTCCCAACTCACGCATTCAGAGGCAGGACGAAGAGGCCTTGCGTTACATCACGCCCGAGAGCTCACCTGTGCGACGCAACCCACGCCGCCGACGTGCCCGCCTGGCACAGCCACGCCCTCCACCCGCACATGAagaagatgaggatgaggaggagacCCCTGAGTCAGGTCTGCAGCAGCAGGAAGAGGGTGATGAAGGCTCGTGCGAGCTGTCGGCCGACGAGGTGAGCCGCGACAGCACGCTGGGCTCTGACTCGGATACGTTCTCCTCGCCGTTCTGTCTGTCGCCTGTTAGTGAAGCGCTGGCCGAGAGCACCAGCTCTGTCTTCCTGGACAACGAGAGCAGGGAGATGTGTGATGAGTCCATGACTCACTCTGCAAGCTCCGCCTCCAGTTTGGACAGCCACGCCCTTTCGGAGAGCAGTCAGTCGCAGGGCATGCGCTGGGAGGAGCAGCAGAAGGTTCTGGCTGTAGAAcagctgtgtggtgtgtttCGAGTGGACCTGGGACACATGCGGTCCCTACGGCTCTTTTTCAGTGATGAGGCCTGCACTAGTGGTCAGTTGGTCATAGCCAGCAGAGAGAGTCAGTACAAGATCCTGCACTTCCACCATGCTGGTCTGGACAAACTGGCCGAAGTCTTTCAGCAGTGGAAATGCTGCAGGGAGACGCAGCTCAAGGACCAGGTGGCGGATGAGAAGTCGTGCATGCAGTTCTCCATCCGCAGACCCACTCTTCCGTCCACGGAGACTCACCCGGAGGAACGTCTCTACCGGAGACTGGATGTCAGCTCCTGGCTGCGGCACCTGAACCACAACGGTCAAGTGGAGGAGGAGTACAAGCTCAGGAAGGCGATCTTTTTTGGGGGAATTGACCCATCCATCCGCGGGGAGGTGTGGCCCTTCCTGCTGCACTACTACAGCTACGACTCCACCTCAGAGGAGCGCGAGGCCTGGAGGCTTCAGAAACGCACCGAGTACCAGGAGATCCAGCAGAGGAGGTTGTCAATGAGCCCTGAGGAGCACAGTGAGTTCTGGAGGAAGGTGCAGTTTACGGTGGATAAGGATGTGGTGAGGACCGACAGGAGCAACATGTTCTTCAGAGGAGAGAACAACCCTAATGTAGAGATCATGAGACGCATCCTCTTGAACTACGCAGTCTATAACGCGGAGATGGGCTACTGCCAGGGAATGTCTGACCTGGTGGCTCCGCTCTTGACCGAGATCCAGGACGAGAGCGACACATTCTGGTGCTTCGTGGGCTTGATGGAGAACACCATCTTCATCAGCTCCCCCAGAGATGAGGATATGGAGCGGCAGCTGATGTATCTGCGAGAGCTCTTGCGCTTGATGCTGCCGCGGTTCCACCAGCACCTGATGCGGCTCGGTGAGGACGGCCTGCAGCTGCTGTTCTGTCATCGCTGGGTTCTGCTGTGCTTCAAGCGCGAGTTTCCCGACACAGAGGCTCTGCGCATGTGGGAGGCCTGCTGGGCTCACTACCagACGGATTACTTCCACCTCTTTCTGTGCGTGGCCATCATTGTTCTCTATGGCGATGATGTCACGGAGCAACAGCTGGCAACAGATCAGATGCTGCTGCACTTTAGCAACCTCTCCATGCACATGAATGGAGAACTGGTGCTGAGGAAGGCACGAAGCCTTCTCTATCAGTTCCGGCTGCTTCCCAGGATCCCTTGCAGTCTGCATGACTTGTGTAAGCTGTGCGGGCCTGGCATGTGGGACAGCCGTTACATCCCCGCCGTAGAATGTTCCGGAGAGCATCCGGACTCGCAGAGCTGCCCCTATGGAGGCATGGCCACCCCGCAACCCCCGCCATCACCAAGCCAGCCTAACGAGGGCAAGCGAGGCTCTAAAAAACGGGACATCTTTAACTTTCGCAAACAGCCTTGACTCTAGGCTCAAAGCTACACTACCCATAATGCCTAGCTCCAGAGGTGCCATTCAACAGGTAGATGGGTGGATGCACACGGCAGTGTAATTATTAGTCATCTAAGAGATATTTGAAAGGATCACTGCCTACTCCAAACACATATTTATGTGTAATTGATATCAGAATCAGCATTGAAGGAAAGGCTTTGCTCTCTTTTCTGAACGAAGTGAGGAGACTCGACGATCAGTGCTGGATCAAACTTCATCTGATAAATTTCAGGAGACTGGCAACTCATAAAAAGGATGGATTGTGACCTTTGTAATtgacaaatcaaaatatattggtactctttcttatttttctttctttcttttttagactgtatgcatgtgtgtgagtgagaaatgTTGAAAAATTGTCTTtggagtttattttattatacagtttcTGCAACCAGTGATCTCACTGCAGTAATGGGAGCAATTTGTCCAGTCAAACTATAGCTGACATACAGAAGGATGGGGTTCATGATGCAAAAAAGACCCTATTTAATCATTCCATACCTCACCATATATTGGCATACAGAGAGTATagattacatacagtatgatattatataagttgtgttttttgttaacaaagcaatatatatatttagaatttttggACATAAAATATTGGACATATTTTATCACTAAACACATGAGCAATACTTCCTGTTCCTAACACTCAATTGTGCATGCTTTGTCTTTTATTAGTACTAATCAAGCAGTGATCAGATATTTGGCTGGTTACGATGTAATGTCAATCCTACCGTAGTGCCGTCAGTTCTGTGCTTGGACGGTGGTGCCGTTGCCTCATGTGTTAAAATCACGACTGTGGCAGAAGGTCTTAATCCGCTCCATAATGCCTCTCAGTGCCGCAGGGGAGAAAAGAGCTCCAGTCCAAACCCAAGTGGGACTTTGTCTATAATTACTTAATCTGGGGACGTTAAGCCGCTGGATGGATGGCGTTCGGGTTGCGCGTCTTCGATGACTGAGTTAGTGGGCCGAAGATGGCCCGCAACTTAAAGGTTCCCCAGAGTCTGTTTGAGAGCAGCTCAGAGAGCAGCAAGCCGCAAATTGCCGTTAAAAGGCAACATTATTCTGCGGGAGCCGAGCTCAGCCTCTCCACACGCAGCCTCGATAAATGCAATGCATTATGGACCCTTTTTAAACCATTAGGCATTTGAAAGGGTTTCTCAGATATCCAGGAAGGCCAAAGGGACCTTAGCAGGGCTGGGAAATAATTGGAAGATGACAGTGATGGCTTatatgttttggtgtgtgtgtgtgtgtgtttgcgcgtgAATAGTTTTGGTTATGTGATAGCAAACTAGCTTACTTTGTTGTGCTCTTTTGAAGCTTAAACTTTAACGTACATactcaggggtggacaaattataaattcattagctagcccaccaggcaTGTGGAACCTCCAGTGTGCCGCCCAATTCCATGTTTTGGTGCATAGAAACTTAACTCACAAGACTAAAAAATGGTAGCTAACATGATATTATAACCTGTGTCCAGATCGTTAGCTAGTTaattgcattaatacagactaagggaaatgAATGAGTATATAAATTCCCAGTGAGAAGACAACCGTGTAGCCGTAGTGCTTATACTTTCCTGATCAAGTTTTTGATGTAGCACATCGTGTTTGGACCTCAAGAAAGAGTTCTCCAATTTGTTGGTACACATTTCagctatgagctgtggtgttctctcCTCGCATTGCAAGTAAAATGTTATCCGAGTCTGGCTagcgtctttattttcttttcgtATATTTAAATGTGCCGGAACCTGTTGTGCATGTTGCGCTAGCAGGAGGGTTGTATAACAGCTTTGTGCTGCACTTAATTTTGCTCAgtttccacatacctgtgtATTCCTGATTCATGAAAAATCAGTCTCCTATCAGTGCACGCTAATTAATCCACCTAGAAAGTAGAAAGTAAAAACCGTTCTACTGTCAGGCACTCATTttgaatcccaccacctgctgaaATAAACACATCGGTTGAGCCAGATTGTGCCTCGCctgagtgtgtagtgcagcaggcggtgGGATTCAGAACAAGTAGCTAATTATAGCATTGAGGTGCGTCACATCACTGtgaaacacattacatttaaacGTGAAATTTGTGTCTTATAAAAGTAaggttttcttattttctttttctggttgttgaagtTTCTTGTCTGCAGGGCAACTACGAATAAAAACCGAATATCCTGAACATTAAATCTGCTTGTTCCAGGCACCTGGGCAAACATTTTGTCTTCACATActtaacatttcatttataacGCTTACATAGATGTTTAATCAGTACAGTCATGTAAAGCCAGATTTACAGGTTTGCCAGCTGATCAGTCGCATGCTTTTGTCATTTGTGGTAAGCCACTGTGCATAGTTATAAAAAAGAGAGGCGTGGACGTCTGCAACCATTTAACAATTCTTGTCAAACCTGACACCTCGTTGATCTTTTGCTGTTACATGCATTGTTAGTCTTAATTACATGAAGAgccatgcatgcacacacatgcatacatgaACACACCTGCCTGCTTGACTTAAGTTCACTTTAAACCGTCAAGACGTGCACATCTGTAACCTGGTGAAATGTCATGTAGATATGTAGCTATCTGATCTCCCTGCCAAACCTTGTTTGCTTTCTCTTTGTATGAGACTCTAGCTGCCTTTCGTCTTCTAGCTACAGAGAGCCAGACAGAGAGTCCTCGGTGTACTGCGTCCCATATGACGCTCATTATGCGGCTGATCGATTCGGGCCAGTTGCTTTCTGGACAAACATATCACATTAATGCACGATCAAAAGAATGCACCgataataaaagacaaaataacaagCCACTTTACATCCACCTCTGCCTGTATTCCTGAGCATGCTGCTCCTTTTATCtgcaaaaataaagataatgaGGATAATGAGTTGTTTTGTATTGTATCAGAATTGCATGGGGAAAAGGGCAGAAGCTCGGTTGTATACTGTgtctgctgtcttttttttttgtgcaccaCAGGATCGAGACTCGTCTGAActctctgttgttgattatgtGGTTTAACTGTAAGGCCTGTAGCAGAGatagtagtttaaaaaaaacagttacttTAAACCCCAAGATGATTCATATCTCAAAAACAGTTGCAGTGTGTGCATGCAGTagcttatttttctttatttctttataaaccTCACCTTTGCACATGATGCATCAGTCAAAGAGATAGAATTCTTACATTTCCCTCTCCCTATTCCCCTCAGTCTCCATCTcgtcatctttctctctctgcatctgtctgtctatctgtctgtcttcccCTTCCTCTCTTTGAGCAGCAGCATGGGGGTCGTGCGAGCCCCCTGCCGCTGAGATTGCATTGCCTGCTGTGCTGTTGGCCCTAATTATCAATTACAGAGGCCAGGCGTCCCCACCTGGAGCAGGCCGAGGTGCTAATAAGCCTGGACTGCTTCGCCTGTCTCGCCGGTgcttgtgtgagtgtatgtgtgtgtgtgtgagtgtgtgtcagcagGGCTGGACGGGCCTCACCGCTGAGCCGCTAATGGATCCTGCACTGTCACACTCGGAGTCTGTAGTCATCCGGGCCAAACCTTCCTCATTAACACGCCTCCTCTTGCTGCCTGATGCTCCACTGCTCAATTCCGCCATTACATTTTCCTACCGTTTTGCATTAGTAATACCACGCACGGTGCTTAGCTTAATCGCAGAAAGACTGTAGGTGTGTAGTAAAGGCGTATGCAAATATGATTTGTTTGTGTGAGTGATAATGACAAAACTGTCATACCAGAATCGTAACCTTTGTGGGGATTTTAGATTTGAATGGGCAGCCTATAATTTTGTTTccgttccaaaaaaaaaaaaacactgattctCAGACCCAAGCGGTTTCTGTTCCTCTAAATACAATATCTGATATGATTTCCATCTTACAACTTGGAATTTACTGAGAAATAACATTAGTCCTAAGCTAGAGCTTGCAGTTCTccataataaatgtgtttatgtgtaaaaaaaacccatttATTAAAATTGCGCATGCAGATTTAAACTCAACAAAGAGAATTATTCGTTTGAGTGCCTGAATGCATTGTACACTTTCCACCTCTTGCTGACAGTTTTCAGTAATCAGAGTTGCAGTTGAAATGTAGCTTTCCTTCTCAGGATGTGCAGGACAACTGCTTTTCTGTCATTTCAGGATTTGCAAAAACAtcaaaatgcctttttttttttttttttttttttgtgatataatgcTTATAGTATGGTCACAATACATTAGAATGATGCATTGCATATACAACAAAGTAAAAGATCTGGCACATATCTCCCCAACCTTCTAATTTTGATTGTCAAAACGTATGTAAAACATGACCGGAAAACCGACCAAGACATTTGAGTATGAAAGTGTTAAGGCATAGTGTTGTATAAGGCATGCTTTCAGATTCCAAATTTAATCTTGAATGTTATAAAGTGTTACACAAACATGGTCTGTATTTCCAGACAGTTCTTCAATACACCAATCCAATTTGCCTCTGCTTAATTTGTGGCTGGCACAATCTGcgggaaaaaaaatttgaatgtactgtgtgtgtaatgtgcatCAGAGCCGTGCATAAATCATAATGGGGAAAACTGTATGAGAAGcgattatatttatttttgtaagatCTATTGTTATGATGATTACTGTAGAATTTAGCAAAAAAACTGATGCAGATGAAGAACTGATTGATGGTTGTAGTGTGACATCCTTAATAAAATGTCTCTTGTGTAATTTGTAGGTGTCCAATCCTATCTGCAAAGGACCAGTGTGTCTGCAGGGTCCCTTTGCGGATTAGACTGGTCACCTCTGTTGTTATTTgttgcctattttttttttattctgctcaTTTTGTGGCATCAGTTTGTTATTTTATGACAGGTTTGTCTGTTTTCAATCACCGCAGTGGCCATCTTCCTCAATCACAACGCAAAGTAGAACCTTTTCACGTTTACACTGACGACTCTGAATGATGCACGACAGCGTAATTGTTTGTACTGTACTGCACCACAGGCCTGTGTCCAATTCAACAACATTCTCTAAAAACAGAGGCCTAGGACACAAACACGAGCGATTGTTGTCACTTTTATACCTTATTTGAACCACATCCTGTagatatcattattattttgcaaataaaacaatgaattatGCACATAA

Function

GO:      GO:0005097,GO:0032851

KEGG:

id description
K24797 TBC1D16; TBC1 domain family member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248481 lncRNA upstream 28275 12019863 ~ 12021132 (+) True G209775
XR_003402931.2 lncRNA upstream 226497 11808261 ~ 11822910 (+) True LOC113528367
TU248059 lncRNA upstream 340471 11708728 ~ 11708936 (+) True G209410
TU248037 lncRNA upstream 414926 11633912 ~ 11634481 (+) True G209392
TU248035 lncRNA upstream 431173 11618035 ~ 11618234 (+) True G209390
TU248585 lncRNA downstream 47202 12133260 ~ 12133471 (+) True G209863
TU248587 lncRNA downstream 50715 12136773 ~ 12139867 (+) False LOC113528416
TU248618 lncRNA downstream 115180 12201238 ~ 12202277 (+) True G209884
TU248620 lncRNA downstream 122178 12208236 ~ 12208486 (+) True G209886
TU248621 lncRNA downstream 122828 12208886 ~ 12209124 (+) True G209887
XM_026917101.2 mRNA upstream 3903 12033886 ~ 12045504 (+) True gaa
XM_026917084.2 mRNA upstream 129744 11861586 ~ 11919663 (+) True grin2ca
XM_034309874.1 mRNA upstream 199071 11830046 ~ 11850336 (+) True rfx1a
XM_026916683.2 mRNA upstream 199071 11830060 ~ 11850336 (+) False rfx1a
XM_026916688.2 mRNA upstream 199071 11830063 ~ 11850336 (+) False rfx1a
XM_026916598.2 mRNA downstream 30381 12116439 ~ 12122136 (+) True cbx4
XM_026916600.2 mRNA downstream 43533 12129591 ~ 12132297 (+) True cbx8a
XM_026916951.2 mRNA downstream 49211 12135269 ~ 12140371 (+) True LOC113528416
XM_026916816.2 mRNA downstream 72645 12158703 ~ 12190070 (+) False arhgap17b
XM_026916815.2 mRNA downstream 72647 12158705 ~ 12190070 (+) True arhgap17b
XR_004579334.1 other upstream 471584 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 512242 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1631526 10349402 ~ 10417881 (+) False G208781
XR_003402925.2 other downstream 72648 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1389770 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3727184 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3832159 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4054272 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile