RNA id: TU248548



Basic Information


Item Value
RNA id TU248548
length 369
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G209829
representative True

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12068254 ~ 12068622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ATAGGGCAGAGTATAGCGTTGCTGCTTTAGCATCACACCTGAAAAAGAGCCGTAGGGACCGCATGTGTCCCAGGTCCACTCGaaacacaccacacagctgTTCTACAGCCAGAACCTTCTGCTGCTCCTCCCAGCGCATGCCCTGCGACTGACTGCTCTCCGAAAGGGCGTGGCTGTCCAAACTGGAGGCGGAGCTTGCAGAGTGAGTCATGGACTCATCACACATCTCCCTGAAAATGAGACCATAATTATATTCCATCCAACACAGTATACCTGCCAATATAAACAGTTAGCTGAcaaaaagaaagcagcagacATCTGTGGTTGTTGCATTAGTCACTGTTGCTGGGTACTATGACACAGGTCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_004579362.1 lncRNA downstream 188837 11845573 ~ 11879417 (-) True LOC117598828
TU248316 lncRNA downstream 403125 11664485 ~ 11665129 (-) True G209646
TU248307 lncRNA downstream 420257 11642168 ~ 11647997 (-) True hmox1a
XR_003402897.2 lncRNA downstream 442186 11619540 ~ 11626068 (-) True LOC113527962
TU248298 lncRNA downstream 442441 11619646 ~ 11625813 (-) False LOC113527962
TU248549 lncRNA upstream 191 12068813 ~ 12069180 (-) True G209830
TU248551 lncRNA upstream 1674 12070296 ~ 12070602 (-) True G209832
TU248558 lncRNA upstream 8050 12076672 ~ 12077073 (-) True G209839
TU248554 lncRNA upstream 15114 12083736 ~ 12084702 (-) True G209835
TU248590 lncRNA upstream 66886 12135508 ~ 12135919 (-) True G209868
XM_026916695.2 mRNA downstream 35496 12015201 ~ 12032758 (-) False tnpo2
XM_026916696.2 mRNA downstream 35496 12015201 ~ 12032758 (-) True tnpo2
XM_026916022.2 mRNA downstream 55278 11964121 ~ 12012976 (-) False tmem104
XM_026916024.2 mRNA downstream 55462 11963695 ~ 12012792 (-) False tmem104
XM_026916021.2 mRNA downstream 55463 11964121 ~ 12012791 (-) False tmem104
XM_026916587.2 mRNA upstream 78874 12147496 ~ 12153883 (-) True LOC113528185
XM_026916823.2 mRNA upstream 121450 12190072 ~ 12200474 (-) True slc5a11
XM_034310196.1 mRNA upstream 121450 12190072 ~ 12197857 (-) False slc5a11
XM_026916812.2 mRNA upstream 133346 12201968 ~ 12236027 (-) True grid2ipa
XM_026916822.2 mRNA upstream 170514 12239136 ~ 12248090 (-) True e4f1
XR_003402971.1 other downstream 42682 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 312331 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 367153 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 502126 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 531576 11536560 ~ 11536678 (-) True LOC113528647
TU248755 other upstream 231383 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 265236 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 480207 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 480207 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 480208 12548830 ~ 12559213 (-) False tom1

Expression Profile