Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU248554 |
| length | 967 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 1 |
| gene id | G209835 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 12083736 ~ 12084702 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU248558 | lncRNA | downstream | 6663 | 12076672 ~ 12077073 (-) | True | G209839 |
| TU248551 | lncRNA | downstream | 13134 | 12070296 ~ 12070602 (-) | True | G209832 |
| TU248549 | lncRNA | downstream | 14556 | 12068813 ~ 12069180 (-) | True | G209830 |
| TU248548 | lncRNA | downstream | 15114 | 12068254 ~ 12068622 (-) | True | G209829 |
| XR_004579362.1 | lncRNA | downstream | 204319 | 11845573 ~ 11879417 (-) | True | LOC117598828 |
| TU248590 | lncRNA | upstream | 50806 | 12135508 ~ 12135919 (-) | True | G209868 |
| TU248700 | lncRNA | upstream | 73368 | 12158070 ~ 12159112 (-) | True | G209946 |
| TU248715 | lncRNA | upstream | 88752 | 12173454 ~ 12174407 (-) | True | G209951 |
| TU248726 | lncRNA | upstream | 152272 | 12236974 ~ 12237192 (-) | True | G209961 |
| TU248756 | lncRNA | upstream | 213422 | 12298124 ~ 12298977 (-) | False | LOC113528332 |
| XM_026916695.2 | mRNA | downstream | 50978 | 12015201 ~ 12032758 (-) | False | tnpo2 |
| XM_026916696.2 | mRNA | downstream | 50978 | 12015201 ~ 12032758 (-) | True | tnpo2 |
| XM_026916022.2 | mRNA | downstream | 70760 | 11964121 ~ 12012976 (-) | False | tmem104 |
| XM_026916021.2 | mRNA | downstream | 70945 | 11964121 ~ 12012791 (-) | False | tmem104 |
| XM_026916020.2 | mRNA | downstream | 70946 | 11963695 ~ 12012790 (-) | True | tmem104 |
| XM_026916587.2 | mRNA | upstream | 62794 | 12147496 ~ 12153883 (-) | True | LOC113528185 |
| XM_026916823.2 | mRNA | upstream | 105370 | 12190072 ~ 12200474 (-) | True | slc5a11 |
| XM_034310196.1 | mRNA | upstream | 105370 | 12190072 ~ 12197857 (-) | False | slc5a11 |
| XM_026916812.2 | mRNA | upstream | 117266 | 12201968 ~ 12236027 (-) | True | grid2ipa |
| XM_026916822.2 | mRNA | upstream | 154434 | 12239136 ~ 12248090 (-) | True | e4f1 |
| XR_003402971.1 | other | downstream | 58164 | 12025502 ~ 12025572 (-) | True | LOC113528656 |
| XR_003402968.1 | other | downstream | 327813 | 11755825 ~ 11755923 (-) | True | LOC113528652 |
| TU248329 | other | downstream | 382635 | 11699906 ~ 11701101 (-) | False | zgc:162612 |
| XR_003402973.1 | other | downstream | 517608 | 11566010 ~ 11566128 (-) | True | LOC113528658 |
| XR_003402963.1 | other | downstream | 547058 | 11536560 ~ 11536678 (-) | True | LOC113528647 |
| TU248755 | other | upstream | 215303 | 12300005 ~ 12315469 (-) | False | LOC113528332 |
| TU248759 | other | upstream | 249156 | 12333858 ~ 12339269 (-) | True | msrb1a |
| XR_004579428.1 | other | upstream | 464127 | 12548829 ~ 12559213 (-) | False | tom1 |
| XR_004579425.1 | other | upstream | 464127 | 12548829 ~ 12559213 (-) | False | tom1 |
| XR_004579426.1 | other | upstream | 464128 | 12548830 ~ 12559213 (-) | False | tom1 |
