RNA id: TU248620


Basic Information

Item Value
RNA id TU248620
length 251
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G209886
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12208236 ~ 12208486 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCAGGTTCTGGAATAGATACTGACATAAAAATCAAAGAATGAGAGTGTGTTCTCCATGTGAAAGTAAGGTGGatggagatagagagatggGTGAATGGTTGTTGAATGCATAGATGCATGGGTATTCTGACACACAGTTAGATGATTGGTTTGCCCAAAAGTTGAAAACATCAACACTACTTCTGAATGGAAAACAGATCCAAATGTCAATTGGTTACTCTTAAAATGATgtatgaaaaagacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248618 lncRNA upstream 5959 12201238 ~ 12202277 (+) True G209884
TU248587 lncRNA upstream 68369 12136773 ~ 12139867 (+) False LOC113528416
TU248585 lncRNA upstream 74765 12133260 ~ 12133471 (+) True G209863
TU248505 lncRNA upstream 122227 12085128 ~ 12086009 (+) False tbc1d16
TU248507 lncRNA upstream 146454 12061569 ~ 12061782 (+) True G209798
TU248621 lncRNA downstream 400 12208886 ~ 12209124 (+) True G209887
TU248628 lncRNA downstream 10815 12219301 ~ 12219553 (+) True G209894
TU248631 lncRNA downstream 23835 12232321 ~ 12232651 (+) True G209897
TU248637 lncRNA downstream 159092 12367578 ~ 12374372 (+) True ndufb10
TU248692 lncRNA downstream 167421 12375907 ~ 12377507 (+) False G209943
XM_026916816.2 mRNA upstream 18166 12158703 ~ 12190070 (+) False arhgap17b
XM_026916826.2 mRNA downstream 56219 12264705 ~ 12272091 (+) True narfl
XM_026916827.2 mRNA downstream 56219 12264705 ~ 12272091 (+) False narfl
XM_026916836.2 mRNA downstream 78734 12287220 ~ 12288452 (+) True fahd1
XM_026916814.2 mRNA downstream 132464 12340950 ~ 12356527 (+) True LOC113528323
XM_026916838.2 mRNA downstream 159080 12367566 ~ 12370262 (+) False ndufb10
XR_003402925.2 other upstream 19647 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 630413 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 671071 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 1790355 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 1267342 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3604756 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3709731 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3931844 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4878805 17087291 ~ 17109275 (+) False srl

Expression Profile