RNA id: TU248694


Basic Information

Item Value
RNA id TU248694
length 2178
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G209943
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12375907 ~ 12378084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAATCTCTTTAATAGTGAATTTTCCATGACACCTAGAATATTGCATTTAATGAAAGCACACTATTAGTAACTGCTGTAAATACTTGCACTTATATCATACTTCATTAGTGACTAAAATAAGCCCATGGGTTTTATTCCATTACTGTAAACGCACATTGTTGTTCTGcaatcacacactgctgttgttgttttgtctttgtgtgcttttttaCCCATTTAGAGATCTGTCTATGAATCTTCTGAAATGCACTCAAGTCCTTTCTGAATTTATATAATCAGGCTGTGTTTATTATATCACTGGTTTGTTTTGCAGTTACAAACTGTGGCTGAGATGAAACCATTGATATCACAGATATCAGAAGTATGATTTAAAAGAGAGAACTAGAAGTCTGATATATTAATAGCACTGGTACAAACAGACAACAAcacacctgtatgtgtgtatgtatgtggcAGCCTGTGAAAACCAGTTGGTTGTTGTTGTGGCTGGCTACTGGCAAGCagtcaaaaagagaaaaaatgtgttttggccaaaattgcatttttttttctgcttgtaaCTTTCctctcaactttaagaaaccataaatattcttcatcaaaatgaaaaggatttttaaaaatttattttctaacTGTCATGGTAGCACCAAACGTAGCGCAGAACTatactacccatcagccccaccTGTTTCACCTTGATTAGCACCACTATTTTAGTTCTAGTTTTTCATCTTCTCATTGTTAAGCTTCTGCTGCTGTTgtattgttgtttgttgtgGTGTGTGCACCACAGTATTGGTTatagtctgtatgtttttttttttgtaatcagatactggctgtcaaaatggTCCCTgatctttaaatgcagttttctccctTTGCACTTCTGAGAACAGTAGTACTTTACTTCTGATTGAGATACAGGAAAAAgggaaacacatttcagttcaagAAAGCCTGTAGTTTCCGGAAATATAAATagttgaaaatgtcaaaatttcaccacgtgatgggttttcccaggcagCCACATGTGTGTTCTTCTGCCGTAGATATTTATTCTGGTCTGCATTTACTGTTCTGTTGCCTAATTATACACCtttaccaggaaaaaaaaatgttgtatcCATTCTTATATATTTAGCAGCTAATTAGTTAACTTTTTTAACTTCAATTTACTTCAGGAGCAGTGCTGAACTGattaataaaaaactttataattttattactgagaagtaaaaataaacatataactGAATGTATTTAAAAGAGGCAATGAAGCACTATGGAAATATGAAACAGAGAATAGCACCCCTCACCACCACAGAGTGTGTGGAAATGGTAGAAGTTCCAGTTCACACTTTTTTGAGATATTTTCTCAGTTTGGCTTATAAAAGTATAGATTAGGACAAAGGAGCAAGAGCTGGTTCCCAAGTTGAATGTTCCTCTTTCCGTCACTTCTGTGTcgattttttattctttgtgtaCTATACAGCAGAGGGCTTTTGGTGTTTTGAGCTGATGTTTTATCGAGCCCTTTTCAGGTTTTGGTATATGTCTTCTCTCACAGTGTGGGACTGTGGCTCTTCAACCTGTAAAAGAATCAGAGATATTAAAGCATGCAGTCCACACATTTAGTTCACAGAAGCCTCTTATCAGGGTTTATGGTTTATGTGAAAACCTTGTTTTCCTGTGAAACATCAGTGgatgtgtttttcttgtttcttcGCAGGTTCCTCTTGCTGTACAGTTCTTGCAACACAGCTCCGAAGTGGACTGTCCTGGTTGAGTCACCCTGAGATGTGTAACAGGAAACAACTTTTTCAACAAAACTAGATTACTTATTACACCAAAGACATACAGAGGTGACCAGAAGACCCACTCGAAATATCTGCTTTGAGGAAAAAGTACAGGTTAAATATACCTAGAATTGCTATTTCACACCATAACCATATCAGTGACTGagttttgttaaaaacattacaatatGCAATTATAGTAATGGTGTGGAAGAGGGAGTGAATTAGCAAGAGAACAAGATGGATGACTTGAACCAAAGGGAAAATAAGGGTTTATAACTAAACTATGAGGGACACCAGAAAGCTAATCTAGGCTACTAGTTTAAGAAGCcacttaaaacattttcaaaaaggcAAAGAAAGTATGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248637 lncRNA upstream 1535 12367578 ~ 12374372 (+) True ndufb10
TU248631 lncRNA upstream 143256 12232321 ~ 12232651 (+) True G209897
TU248628 lncRNA upstream 156354 12219301 ~ 12219553 (+) True G209894
TU248621 lncRNA upstream 166783 12208886 ~ 12209124 (+) True G209887
TU248620 lncRNA upstream 167421 12208236 ~ 12208486 (+) True G209886
TU248695 lncRNA downstream 75 12378159 ~ 12378413 (+) True G209944
TU248698 lncRNA downstream 862 12378946 ~ 12380986 (+) True G209945
TU248885 lncRNA downstream 168349 12546433 ~ 12548503 (+) True G210086
TU248969 lncRNA downstream 401165 12779249 ~ 12780136 (+) True G210160
TU249018 lncRNA downstream 442992 12821076 ~ 12821284 (+) True G210209
XM_026916838.2 mRNA upstream 5645 12367566 ~ 12370262 (+) False ndufb10
XM_026916814.2 mRNA upstream 19380 12340950 ~ 12356527 (+) True LOC113528323
XM_026916836.2 mRNA upstream 87455 12287220 ~ 12288452 (+) True fahd1
XM_026916826.2 mRNA upstream 103816 12264705 ~ 12272091 (+) True narfl
XM_026916987.2 mRNA downstream 7891 12385975 ~ 12389435 (+) True kdelr2a
XM_026916328.2 mRNA downstream 18420 12396504 ~ 12435649 (+) True spag9a
XM_026916333.2 mRNA downstream 18420 12396504 ~ 12435649 (+) False spag9a
XM_026916330.2 mRNA downstream 18420 12396504 ~ 12435649 (+) False spag9a
XM_026916335.2 mRNA downstream 18420 12396504 ~ 12435649 (+) False spag9a
XR_003402925.2 other upstream 187318 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 798084 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 838742 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 1958026 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 1097744 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3435158 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3540133 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3762246 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4709207 17087291 ~ 17109275 (+) False srl

Expression Profile