Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026916839.2 |
| length | 910 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 4 |
| gene id | msrb1a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 12333854 ~ 12339269 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0030041 | actin filament polymerization | biological_process |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0033743 | peptide-methionine (R)-S-oxide reductase activity | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU248758 | lncRNA | downstream | 192 | 12333454 ~ 12333662 (-) | True | G209984 |
| TU248756 | lncRNA | downstream | 34877 | 12298124 ~ 12298977 (-) | False | LOC113528332 |
| TU248726 | lncRNA | downstream | 96662 | 12236974 ~ 12237192 (-) | True | G209961 |
| TU248715 | lncRNA | downstream | 159447 | 12173454 ~ 12174407 (-) | True | G209951 |
| TU248700 | lncRNA | downstream | 174742 | 12158070 ~ 12159112 (-) | True | G209946 |
| XR_004579344.1 | lncRNA | upstream | 107198 | 12446461 ~ 12463878 (-) | True | LOC117598772 |
| TU248929 | lncRNA | upstream | 247168 | 12586431 ~ 12587089 (-) | True | G210123 |
| TU249181 | lncRNA | upstream | 528327 | 12867590 ~ 12868480 (-) | True | G210351 |
| TU249178 | lncRNA | upstream | 529989 | 12869252 ~ 12870186 (-) | True | G210349 |
| TU249180 | lncRNA | upstream | 582674 | 12921937 ~ 12923464 (-) | True | G210350 |
| XM_026916829.2 | mRNA | downstream | 18356 | 12297776 ~ 12315498 (-) | True | LOC113528332 |
| XM_026916834.2 | mRNA | downstream | 46716 | 12280033 ~ 12287138 (-) | False | LOC113528334 |
| XM_026916833.2 | mRNA | downstream | 46716 | 12280033 ~ 12287138 (-) | True | LOC113528334 |
| XM_026916830.2 | mRNA | downstream | 55263 | 12272170 ~ 12278591 (-) | True | hagh |
| XM_026916831.2 | mRNA | downstream | 55264 | 12272170 ~ 12278590 (-) | False | hagh |
| XM_026916828.2 | mRNA | upstream | 17361 | 12356624 ~ 12363766 (-) | True | LOC113528330 |
| XM_026916835.2 | mRNA | upstream | 32270 | 12371533 ~ 12374265 (-) | True | rps2 |
| XM_026916147.2 | mRNA | upstream | 36630 | 12375893 ~ 12381034 (-) | True | si:ch211-139g16.8 |
| XM_034310198.1 | mRNA | upstream | 50443 | 12389706 ~ 12394578 (-) | False | LOC113528448 |
| XM_034310199.1 | mRNA | upstream | 50443 | 12389706 ~ 12394578 (-) | False | LOC113528448 |
| TU248755 | other | downstream | 18385 | 12300005 ~ 12315469 (-) | False | LOC113528332 |
| XR_003402971.1 | other | downstream | 308282 | 12025502 ~ 12025572 (-) | True | LOC113528656 |
| XR_003402968.1 | other | downstream | 577931 | 11755825 ~ 11755923 (-) | True | LOC113528652 |
| TU248329 | other | downstream | 632753 | 11699906 ~ 11701101 (-) | False | zgc:162612 |
| XR_003402973.1 | other | downstream | 767726 | 11566010 ~ 11566128 (-) | True | LOC113528658 |
| XR_004579428.1 | other | upstream | 209566 | 12548829 ~ 12559213 (-) | False | tom1 |
| XR_004579425.1 | other | upstream | 209566 | 12548829 ~ 12559213 (-) | False | tom1 |
| XR_004579426.1 | other | upstream | 209567 | 12548830 ~ 12559213 (-) | False | tom1 |
| XR_004579427.1 | other | upstream | 209857 | 12549120 ~ 12559213 (-) | False | tom1 |
| trnas-aga_12 | other | upstream | 487195 | 12826458 ~ 12826539 (-) | True | trnas-aga_12 |
