Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU248969 |
| length | 888 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G210160 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 12779249 ~ 12780136 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU248885 | lncRNA | upstream | 230746 | 12546433 ~ 12548503 (+) | True | G210086 |
| TU248698 | lncRNA | upstream | 398263 | 12378946 ~ 12380986 (+) | True | G209945 |
| TU248695 | lncRNA | upstream | 400836 | 12378159 ~ 12378413 (+) | True | G209944 |
| TU248694 | lncRNA | upstream | 401165 | 12375907 ~ 12378084 (+) | True | G209943 |
| TU248692 | lncRNA | upstream | 401742 | 12375907 ~ 12377507 (+) | False | G209943 |
| TU249018 | lncRNA | downstream | 40940 | 12821076 ~ 12821284 (+) | True | G210209 |
| TU249234 | lncRNA | downstream | 264854 | 13044990 ~ 13045833 (+) | True | G210384 |
| TU249423 | lncRNA | downstream | 585548 | 13365684 ~ 13365893 (+) | True | G210532 |
| TU249525 | lncRNA | downstream | 664612 | 13444748 ~ 13445227 (+) | False | znf653 |
| TU249558 | lncRNA | downstream | 679843 | 13459979 ~ 13460490 (+) | True | G210655 |
| XM_026916965.2 | mRNA | upstream | 3434 | 12695369 ~ 12775815 (+) | True | usp43b |
| XM_026916966.2 | mRNA | upstream | 3434 | 12707352 ~ 12775815 (+) | False | usp43b |
| XM_026916968.2 | mRNA | upstream | 3434 | 12710296 ~ 12775815 (+) | False | usp43b |
| XM_026916033.2 | mRNA | upstream | 117633 | 12616284 ~ 12661616 (+) | True | ntn1b |
| XM_026916888.2 | mRNA | upstream | 288302 | 12487277 ~ 12490947 (+) | True | tob1a |
| XM_026916610.2 | mRNA | downstream | 4161 | 12784297 ~ 12817380 (+) | True | grb2b |
| XM_026916504.2 | mRNA | downstream | 50059 | 12830195 ~ 12862010 (+) | True | bptf |
| XM_026916505.2 | mRNA | downstream | 50059 | 12830195 ~ 12862010 (+) | False | bptf |
| XM_026916506.2 | mRNA | downstream | 50059 | 12830195 ~ 12860776 (+) | False | bptf |
| XM_026916508.2 | mRNA | downstream | 50060 | 12830196 ~ 12862010 (+) | False | bptf |
| XR_003402925.2 | other | upstream | 590660 | 12158706 ~ 12188589 (+) | False | arhgap17b |
| XR_004579334.1 | other | upstream | 1201426 | 11567119 ~ 11577823 (+) | False | luc7l3 |
| XR_003402977.1 | other | upstream | 1242084 | 11537047 ~ 11537165 (+) | True | LOC113528662 |
| TU247338 | other | upstream | 2361368 | 10372415 ~ 10417881 (+) | False | G208781 |
| XR_004579399.1 | other | downstream | 695692 | 13475828 ~ 13492850 (+) | False | zgc:158403 |
| trnar-ucu_8 | other | downstream | 3033106 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| TU251011 | other | downstream | 3138081 | 15918217 ~ 15968759 (+) | True | G211913 |
| TU251142 | other | downstream | 3360194 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
| TU251743 | other | downstream | 4307155 | 17087291 ~ 17109275 (+) | False | srl |
