RNA id: TU249260


Basic Information

Item Value
RNA id TU249260
length 477
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC113527982
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12979965 ~ 13020678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtatgtgtgtgtgtgtgagagagagagagagagagagagagagagaaatttcaGGCAGTCACAGTGGAGTCATTAGGGCTGATATTAGCCAGCTGTGTGTGCGCACGTCTAGGCTGAAGAGGCTCGTAAGGACATTGTGGGAGTTGAGAAGATGATATTTCTCTGAAGATGAGaagtATGATGGCTGTCTGGATTTAAGTCCATCTCTCAGAAAGGACTTTGAGATGACAACACAAGAGTGTGATGGCCCTACCAATcgcctgtgtggagtttacttgggtttcatctgggttccccagtttcctcccattgtCCAaaagcatatgtgtgtgtttgtgtgcacggTGTCCTGTCATGGACTGGTGTCCTGGTATTCCCGCCTCCTGCCCtttgttcctgggatagactccggatctattgtgaccctgaccaggatgtaACAGATAATTAAGATGAAAGAATAAAATGGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579372.1 lncRNA downstream 30853 12947310 ~ 12949117 (-) True LOC117598834
TU249177 lncRNA downstream 51162 12926645 ~ 12928808 (-) True G210348
TU249180 lncRNA downstream 56506 12921937 ~ 12923464 (-) True G210350
TU249178 lncRNA downstream 109784 12869252 ~ 12870186 (-) True G210349
TU249181 lncRNA downstream 111490 12867590 ~ 12868480 (-) True G210351
TU249275 lncRNA upstream 44007 13034128 ~ 13034852 (-) True G210412
TU249295 lncRNA upstream 87878 13077999 ~ 13078945 (-) True G210427
TU249303 lncRNA upstream 105123 13095244 ~ 13095477 (-) True G210435
TU249304 lncRNA upstream 105399 13095520 ~ 13095737 (-) True G210436
TU249332 lncRNA upstream 181720 13171841 ~ 13172066 (-) True G210461
XM_034309783.1 mRNA downstream 367044 12593577 ~ 12612926 (-) False pik3r6b
XM_034309784.1 mRNA downstream 370216 12593577 ~ 12609754 (-) False pik3r6b
XM_026916230.2 mRNA downstream 370216 12593577 ~ 12609754 (-) False pik3r6b
XM_026916229.2 mRNA downstream 370217 12593577 ~ 12609753 (-) True pik3r6b
XM_034309785.1 mRNA downstream 373922 12593577 ~ 12606048 (-) False pik3r6b
XM_034309972.1 mRNA upstream 57198 13047319 ~ 13063983 (-) False ilf3b
XM_026916474.2 mRNA upstream 57198 13047319 ~ 13062742 (-) True ilf3b
XM_034309973.1 mRNA upstream 59449 13049570 ~ 13062742 (-) False ilf3b
XM_026916475.2 mRNA upstream 60112 13050233 ~ 13062742 (-) False ilf3b
XM_026917297.2 mRNA upstream 106138 13096259 ~ 13104829 (-) True gcdhb
trnas-aga_12 other downstream 153431 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 420757 12548829 ~ 12559213 (-) False tom1
XR_004579330.1 other upstream 405345 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 1014048 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 1030127 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1497700 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1530156 14520277 ~ 14520975 (-) True G211151

Expression Profile