RNA id: XR_003402901.2


Basic Information

Item Value
RNA id XR_003402901.2
length 759
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC113527982
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12979965 ~ 13020678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgagagagagagacgttgctAAAGTTCGGTGCTGTGCCTCGAGATGCCCGCGGTGTTGGAAAAGTGTACGACggagatttcagggaaaagaagaCTCAGAAACTCGATGAACAACCCgacaaaaagttttacttcCAACGGCAACAGTAACAGTTGTTGGTCAGTGATGAGGAGCAGGATGTTCAAGAGCCATATGCAGAGCCACTGGAATTGACTTCATCCACTAATATGATTGTCTGGTATGCAAACTGTACTGGGTCCAAAAGGCCAGAAATGATACTGCTGATTGATGTATGAGagagagagagagagagagagagagagaaatttcaGGCAGTCACAGTGGAGTCATTAGGGCTGATATTAGCCAGCTGTGTGTGCGCACGTCTAGGCTGAAGAGGCTCGTAAGGACATTGTGGGAGTTGAGAAGATGATATTTCTCTGAAGATGAGaagtATGATGGCTGTCTGGATTTAAGTCCATCTCTCAGAAAGGACTTTGAGATGACAACACAAGAGTGTGATGGCCCTACCAATcgcctgtgtggagtttacttgggtttcatctgggttccccagtttcctcccattgtCCAaaagcatatgtgtgtgtttgtgtgcacggTGTCCTGTCATGGACTGGTGTCCTGGTATTCCCGCCTCCTGCCCtttgttcctgggatagactccggatctattgtgaccctgaccaggatgtaACAGATAATTAAGATGAAAGAATAAAATGGATGATTAAA

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579372.1 lncRNA downstream 30848 12947310 ~ 12949117 (-) True LOC117598834
TU249177 lncRNA downstream 51157 12926645 ~ 12928808 (-) True G210348
TU249180 lncRNA downstream 56501 12921937 ~ 12923464 (-) True G210350
TU249178 lncRNA downstream 109779 12869252 ~ 12870186 (-) True G210349
TU249181 lncRNA downstream 111485 12867590 ~ 12868480 (-) True G210351
TU249275 lncRNA upstream 13450 13034128 ~ 13034852 (-) True G210412
TU249295 lncRNA upstream 57321 13077999 ~ 13078945 (-) True G210427
TU249303 lncRNA upstream 74566 13095244 ~ 13095477 (-) True G210435
TU249304 lncRNA upstream 74842 13095520 ~ 13095737 (-) True G210436
TU249332 lncRNA upstream 151163 13171841 ~ 13172066 (-) True G210461
XM_034309783.1 mRNA downstream 367039 12593577 ~ 12612926 (-) False pik3r6b
XM_034309784.1 mRNA downstream 370211 12593577 ~ 12609754 (-) False pik3r6b
XM_026916230.2 mRNA downstream 370211 12593577 ~ 12609754 (-) False pik3r6b
XM_026916229.2 mRNA downstream 370212 12593577 ~ 12609753 (-) True pik3r6b
XM_034309785.1 mRNA downstream 373917 12593577 ~ 12606048 (-) False pik3r6b
XM_034309972.1 mRNA upstream 26641 13047319 ~ 13063983 (-) False ilf3b
XM_026916474.2 mRNA upstream 26641 13047319 ~ 13062742 (-) True ilf3b
XM_034309973.1 mRNA upstream 28892 13049570 ~ 13062742 (-) False ilf3b
XM_026916475.2 mRNA upstream 29555 13050233 ~ 13062742 (-) False ilf3b
XM_026917297.2 mRNA upstream 75581 13096259 ~ 13104829 (-) True gcdhb
trnas-aga_12 other downstream 153426 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 420752 12548829 ~ 12559213 (-) False tom1
XR_004579330.1 other upstream 374788 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 983491 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 999570 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1467143 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1499599 14520277 ~ 14520975 (-) True G211151

Expression Profile