RNA id: TU249295


Basic Information

Item Value
RNA id TU249295
length 899
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G210427
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13077999 ~ 13078945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGATGTTTATGTTAAAAGTCACCCATTAAGACATGTGACTGCTTGCATCCCTCAAGCAAACATCTAAACAAGCACATTAAGCTTCATCTGACGTTAAGACATTGACTGACAGATTAGGAGGTGGATATTTAAGCTCTTTAATTACACAAATAACCTTCAAgtacaatctctctctcacacacacacacacacacacacacacaggacttaAAAGCACAGAGATtcaatttttaaacatgtttaatttatcatttttacaaCATGAATGCTTCCCTTTAAGCTGGTGTATTTGCATTGTGAGTTGTGAAGGTAACAGAGTATCAGCATTATTTTTGCAAGACATGGGCCAGAAGAAATGGTACTTCATTTAATACAAGCACTAAGTCAGTAATAAAAGACATACAGATCAACTGCTTACAGTCAGAACCAGTAGGGCTGAGTCAGAATGCTAATTAACTAGTACTAACATTAGCTCTGAGTGCATGCAGATTTGATTGGAGTAGTGCATCTGTATGGGGATAATATAAACGTAATTTATAGCCGGCAGCTTCACCTAAAatatgtcataattttttttccagtccgTCAAAGGTGTCAGCCCAACTTAGTCTCTTAATCATTGAGATACTGACAGTGGACCCCAGCAGAGTGTATGTCAGAGTGTCACTGGCGTGATTTACACAGGGCAATGTGGACTGATCCAGGATGCTTGAATGAATCCATGAGACTGGCGTATGAGAGGCTTCTAAAGAGACAGGCTTTTCTTTCCTGTGATTGTTCCTGAGTGCAGTTTAAGAGTCCAGGCGACACACTGGGCTGTCGTACACCATCTGCAGGTTTACTTTGTGCCCCACAAGCTCACGGATGTTGTTGATGCCGTACTTGATCATGGTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249275 lncRNA downstream 43147 13034128 ~ 13034852 (-) True G210412
XR_003402901.2 lncRNA downstream 57321 12979965 ~ 13020678 (-) True LOC113527982
TU249260 lncRNA downstream 87878 12979970 ~ 12990121 (-) False LOC113527982
TU249259 lncRNA downstream 87966 12979970 ~ 12990033 (-) False LOC113527982
XR_004579372.1 lncRNA downstream 128882 12947310 ~ 12949117 (-) True LOC117598834
TU249303 lncRNA upstream 16299 13095244 ~ 13095477 (-) True G210435
TU249304 lncRNA upstream 16575 13095520 ~ 13095737 (-) True G210436
TU249332 lncRNA upstream 92896 13171841 ~ 13172066 (-) True G210461
TU249463 lncRNA upstream 231588 13310533 ~ 13354585 (-) True G210570
XR_003402958.2 lncRNA upstream 290509 13369454 ~ 13372938 (-) True LOC113528601
XM_034309972.1 mRNA downstream 14016 13047319 ~ 13063983 (-) False ilf3b
XM_026916474.2 mRNA downstream 15257 13047319 ~ 13062742 (-) True ilf3b
XM_034309973.1 mRNA downstream 15257 13049570 ~ 13062742 (-) False ilf3b
XM_026916475.2 mRNA downstream 15257 13050233 ~ 13062742 (-) False ilf3b
XM_034309783.1 mRNA downstream 465073 12593577 ~ 12612926 (-) False pik3r6b
XM_026917297.2 mRNA upstream 17314 13096259 ~ 13104829 (-) True gcdhb
XM_026917298.2 mRNA upstream 17965 13096910 ~ 13104838 (-) False gcdhb
XM_026916922.2 mRNA upstream 131424 13210369 ~ 13220022 (-) False nfil3-2
XM_026916923.2 mRNA upstream 131424 13210369 ~ 13219073 (-) True nfil3-2
XM_026917090.2 mRNA upstream 144299 13223244 ~ 13226875 (-) True nfil3-6
trnas-aga_12 other downstream 251460 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 518786 12548829 ~ 12559213 (-) False tom1
XR_004579330.1 other upstream 316521 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 925224 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 941303 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1408876 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1441332 14520277 ~ 14520975 (-) True G211151

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU62428 True 859 lncRNA 0.45 2 CM030126.1 3963128 ~ 3964014 (+)