RNA id: TU249617


Basic Information

Item Value
RNA id TU249617
length 1599
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G210699
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13842973 ~ 13844571 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATGTGCTTGCGTAGCACCCTTAGCTtttaaacgaaaaaaaaaaaaaaaaaaaaatgcagtggtAAACATCTAGATGGCATCATTTCAAAAGAAGccattccaaacacacacaaaggaggCAGTCACAGCattaccaaacacacacaagcaacagTTTTTTCTTCTGATGGACATGGACATTTAGTGGCGCTTGTCCATTTTGCTCATTTCCTAAACTCTACACGATCCACATGATGGTGAAAGTGTGACTCTATAAGCAGCACTTGAAATATTCTCAAATGGAGCCACTGATCATTTGGCCACCCGAGTGACTTCATAAGCTCCACATTGTTGTCTGTAATTCAGACATTTCTCTTACAGTAAAGTGCACTTTATCAATCGGCTTCTGAAGTTTggaaatcaaaataataataataattacaggctaaaactttttgcagccagggacccctttaactctAAAATATATTCCGCAGAACCTCCAACACTGATTTCAACAATTCTaaatcatttgtgtgtgtacaataaTCTTTTTGTATTAATTGGAGCCATAAAGTATTTtcttcctgaactttccactgataCAAGACATTAGGTCTTTGCTGagattatttataggcctacttgtttttcagttcttGAGAATGGCGTAAAACCTACTTAATTCATGTAACCAGTCAAactggctaataactataagaacacaattataatgtatataacaGTTTTCCTAATGGCGGGGTGTGATTtccaacacaaaataaaacaaaatttaaaaaaaaaaaaaaaacctcacggACCCCCTGGCTACGCTTCACACACCTCAATAAGAGAACCACTGGGCTGCAGGACTCCAACCACTGACAGGTAGAGTAAagcttaaatttaaaaaattggctacaaatactgtatacacagaAGAAAATGTGCACTTTTTTGATTTGTTCTgaaactaggaaaaaaaaaaaaacttgaggtTAACGGCTTTGCATCATCAATCCAGTCAAATTAAGACTGCATATGGACACACCCCAAAAAACTTGTAACGTTTATGAACAATGATtctttaaaattagaaaatgttcTCATGTGCAAATGTCAATTAATTCTTCTCTTAGATTGTCCCTGACACCAATCCTCAGGACAAGGTGCCTTGACCAGAAAACAGTGGGATGATCCGAGAGACCCATATCCTGTAAACATCACTCCCAGGGGCCCTACTCTCCCCTGTAGTCCACCTTAGTGTTCTAACCCTTGTTCTCTCCCAATCTTTCGGGCTACCTGATGCGGCCGTTGCTTTTGACCGTACCGAGTTCGGATTTGGGATCTGGGGACAAGGAGCTCCAGCTAGTTTTGGCACACAGCTGTACACTGGGACAGAGGGACGTCTGAGTGGAACACATGGCTCCAGTTACCCAGAAGGCACCCACTAAGCTGTCCACCCAACCCTCCAGAGCCTTGCCCACCAGAGAGGCCTTCTTCTGAGACTCCTCCAGGGCAGGCTCCATGGGAGGCAGCTTCAGAACCTGAGCGAGCTGCTGGAAGCCCTGCTCCAAGTAAACGTTGCCTGCAGGGCCTGCGTGCAGCCAGCTGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249647 lncRNA upstream 98445 13743449 ~ 13744528 (+) True G210725
TU249641 lncRNA upstream 147174 13695490 ~ 13695799 (+) True G210719
TU249611 lncRNA upstream 173422 13665516 ~ 13669551 (+) True G210694
TU249616 lncRNA upstream 179472 13662174 ~ 13663501 (+) True G210698
TU249558 lncRNA upstream 382483 13459979 ~ 13460490 (+) True G210655
TU249704 lncRNA downstream 8273 13852844 ~ 13854257 (+) True G210778
TU249705 lncRNA downstream 10572 13855143 ~ 13855795 (+) True G210779
TU249708 lncRNA downstream 16437 13861008 ~ 13861230 (+) True G210782
TU249716 lncRNA downstream 17801 13862372 ~ 13862879 (+) True G210789
TU249719 lncRNA downstream 25799 13870370 ~ 13871092 (+) True G210792
XM_026916945.2 mRNA upstream 108757 13721234 ~ 13734216 (+) True dhps
XM_026917214.2 mRNA upstream 129089 13702714 ~ 13713884 (+) False fbxw9
XM_034309974.1 mRNA upstream 129089 13702851 ~ 13713884 (+) True fbxw9
XM_026917215.2 mRNA upstream 129090 13702684 ~ 13713883 (+) False fbxw9
XM_026916653.2 mRNA upstream 182734 13568816 ~ 13660239 (+) False nfixb
XM_034309807.1 mRNA downstream 32589 13877160 ~ 13889327 (+) False si:ch73-364h19.1
XM_034309808.1 mRNA downstream 40393 13884964 ~ 13889327 (+) True si:ch73-364h19.1
XM_026917160.2 mRNA downstream 48900 13893471 ~ 13903111 (+) True si:ch211-120g10.1
XM_026917057.2 mRNA downstream 100794 13945365 ~ 13960351 (+) True cdr2l
XM_026916216.2 mRNA downstream 273382 14117953 ~ 14122314 (+) True nptx1l
XR_004579399.1 other upstream 350123 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 1654384 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 2265150 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 2305808 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 3425092 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 1968671 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2073646 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 2295759 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 3242720 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 4339448 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile