RNA id: TU249641


Basic Information

Item Value
RNA id TU249641
length 310
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G210719
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13695490 ~ 13695799 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCCAGATAGCTAAATGACACTGGCCTCCTCATGAAGTGTGCCTTTCAGTGTTGGACCAGTGTTCACAAAGTAGATTTAAAAGTGGCTGAAAGTTTGGTGGCCCAACATGGCTGACGTTTGACGCATCAGTTACCTgggtatttttctttttaatctaaGAATTTTGACCAACAATTCTACATTTACTTCAGTATCAGGAAGGCATTGTGTAAGTTTTCCCTGACCCTCTGTGTTGATCTTTACAAAAGccttccctgctgaaaaatccaccATAATCTGATAAAACACAGGCCGAGCAGGTCAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249611 lncRNA upstream 25939 13665516 ~ 13669551 (+) True G210694
TU249616 lncRNA upstream 31989 13662174 ~ 13663501 (+) True G210698
TU249558 lncRNA upstream 235000 13459979 ~ 13460490 (+) True G210655
TU249525 lncRNA upstream 250263 13444748 ~ 13445227 (+) False znf653
TU249423 lncRNA upstream 329597 13365684 ~ 13365893 (+) True G210532
TU249647 lncRNA downstream 47650 13743449 ~ 13744528 (+) True G210725
TU249617 lncRNA downstream 147174 13842973 ~ 13844571 (+) True G210699
TU249704 lncRNA downstream 157045 13852844 ~ 13854257 (+) True G210778
TU249705 lncRNA downstream 159344 13855143 ~ 13855795 (+) True G210779
TU249708 lncRNA downstream 165209 13861008 ~ 13861230 (+) True G210782
XM_026916655.2 mRNA upstream 35251 13525752 ~ 13660239 (+) True nfixb
XM_026916660.2 mRNA upstream 35251 13540915 ~ 13660239 (+) False nfixb
XM_026916662.2 mRNA upstream 35251 13567929 ~ 13660239 (+) False nfixb
XM_026916653.2 mRNA upstream 35251 13568816 ~ 13660239 (+) False nfixb
XM_034310249.1 mRNA upstream 40325 13517596 ~ 13655165 (+) False nfixb
XM_026917215.2 mRNA downstream 6885 13702684 ~ 13713883 (+) False fbxw9
XM_026917214.2 mRNA downstream 6915 13702714 ~ 13713884 (+) False fbxw9
XM_034309974.1 mRNA downstream 7052 13702851 ~ 13713884 (+) True fbxw9
XM_026916945.2 mRNA downstream 25435 13721234 ~ 13734216 (+) True dhps
XM_034309807.1 mRNA downstream 181361 13877160 ~ 13889327 (+) False si:ch73-364h19.1
XR_004579399.1 other upstream 202640 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 1506901 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 2117667 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 2158325 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 3277609 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 2117443 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2222418 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 2444531 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 3391492 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 4488220 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile