RNA id: TU249799


Basic Information

Item Value
RNA id TU249799
length 5545
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G210858
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13591439 ~ 13660814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCATATGTTGCTGCACAATTTATCCACCCCCTCTACCCCATCCATCTAGACAGATGTAAATAAACAGCATTTCTGTGGTGAGTTGTGATGGTACATTGGCAAGCATTTTAAGTTGTAATCATTAGTTCCTGTCTGCTCGGGAGGGTAGCGGGTGGTGGGGAGAAGGagatgattaaataaaacagtaaaaagagACATACAGTGTGTCTGAAATCGcttcctcactcactccctcactggTTTACTATTTGCTTTAAAGACTGTTCTATATAGTGATCTATATAGGGTGCAAGAGACATGACTGAATTCAGACACTGAGTAGTGAGTGTTCTGGACACGTCATCATGCCCTGCTCCTAAGAGAACTAAGTACCTAGCAAACTGAAACACCAAATATACAGAAGTTTTAAAAGggattttctgtattaaatatacACTTTGGCCTTAGTGGTATTTAAACAGCATATTTATTCACCTTTATTTACAAAGCTGGTCAAAATTTCAAACTAAAAGAAATGGTGGGCAAGAGTGTGCATCGGCTGTACACTGAATTTATGGAGCACTATGTGGTGAAAAATGGGAATGAACTCAGACATTgtaatagagagagacagagagagaggcagtgatTGGCTGAGCAGATGGGTGGATGAGTGAGGAATTGAATAAACGGATAGGTGGAGAACAGAAAGTGGAAAGAAAGAGTGGTCACATCACACAGCCAGTCTGCTAGCTCAGCTTAAAGCATGTGCTGTAATTCCCAATCTGAATTACTGAATTAATCAGTAACTCATTTCTCTTCATCACAAGTGCCAGTCGAAATCTCACgccttaaaaaatatttgtgaacTGTTTGCTAAAGCTAGCAGGCACAttgacattaatgtttttttgatGTTGGCTGTGTGAAGAGACTAAGAATGAAGTTGATAtacgtgtgtgggtgtgtgtgtgtgtatacctgcaTCCACATCGTTAGGCCAGCCACTGGGCTGTGAGCTGCCGGGCGCAGGGGAACGGCCCGAGTAGAACACATCATCCACTGGGCTCTCCATTTCACTGTCATCAATGGACTTACGCTTGTTTGAGctgagagcaggagagagaaggagcgaCAGGAGAAATGAAAATTACAGACAGTACGCAGACTTGGTGAGCACAGCTTTGCCATGAAAGCTGTCTGTGACCTGGAAGTAGTCACTTAAAGGGTCAGATCAAATTTACCATTTTAACACATGTAATCAATTAGTCAAGACATGTTTTGATGTCTGACATCCACTTAATTAATTTTACACTGGAGCTATAAGGTGATATAGGTGTTCATTAGGTTTTAGCAACCAGATAGATTCCAGTGCAAAACTAGAGACTAGAGACTGGTAGTACAGTAAGTAGAGTGGCTGCCTCACAGTTCTAGGGTCCTCGGTTTGACCCCGAGCTTAGACTACTGcctgtgtgtggtgtttctgtACATGTTCTCTCCATATCCACTTCGGTTTGCTCATTCACTCCTGAATGAATGAACTATAGAACCACATTTTGGATACCAGACATGTCTTAGCTAAATGATGACATCTGGGGTGAGAGGAACATTCTGTAAATTTCATTACTTTAATTAGTTACATTGAATGATGTCTCCCCAACATCAGTCCAATAAGAAATAGTTCtttaaaaataagcaataaagAAAGATCTTCTCTTTTCCTACATTTTGGGAAGAGTAGACTAATCTCACAGCCAGCAAAGTTTGCGACCCCCTAAAATGACCCAATTTACATTCCCAACTTTTAGAACTACTACTTGCGACTACTTGCTAGTAGTTCTAtgagttactgaataatttatagtagttactgaatcatATACTTTAAGACgaataattaagtaaaaatcCAGGACTTTAAGGGGTTAAGTAACAATCAGTGAGACCAAAAAACACtcaaagtattaaaaagtatacattctttaaatatatttggtTCATGATACATTTACCATTTTGATATAGAACATGTGCTTAAGTTAACTGCTTTGACTATAATGTAACGTTGAGCCAATAAAATGAATTGAGAAAGATGGAATAAAAAGGTAAGAATAACAAATAAGTAacatggatttttaaaaaaaatattatgtagtATTAATGTCATAATACATAATGCATTTAGCATGTGATTAAAAATAGAACATAAACATGCTTTCCTGATATGATGAAAATAATATTGTAACTTAGAGTCCTAATCTATCTGCCATCCCATATATCACGGCTGTCAAACTGCAGTCCTGGAGAGCCTCATTGTTTAGTGGACAGCTTaattgtttagtgtttaactAATTTTTAGGGTGAAGGCCTTGTGGAGTTTAATCTGGTATGTACAAGCAACCATGCTGCGGCCCTCAAAGACTGCAGCCTTCCATACAGAACATGATAGACTTGTTTGATATATTATTTGATACTGATTTAATTATCCCCAGATGATCTTATATTGCCCTGGAATCATATTGGGCCTGATTATGTAatctttttaaagcttttctattagttctttttaaaaaaataaattttgaatgATATAGCATGCTGCGGCCTTGTTATGATCCCCTTTACTGCATCAAAATAATTGTGGGGAAAAATGGATTGTAATCAACAAGGTAGAAAATCCACTTATCTGGTGGAAAACACATGGGAAGTGTTTCCCTATCACCAACAGTACTAAAAACTGCAAGCCGTAGCACAAATTAAACCGTTAAATTAAAATCGTTGCACTGAGATAAGTCTAAATAGAACAGCTAAAGTGATCCACATAATTCTTAATTTCAACTGAAACATATCACGAAGACTTATAATGTGAGTGTAAGTTtccatcatctttttttttttaaatttctgaaaGGTCTGACTCACATTCTGAACAAATCTTACAAATCTGAACAAAACAGTTAAAGGCTAAATATTTTCTTACTGTCATGACCTCATATTGAACTGAACAgtgtaatttttgtttattttatgtcgTCTGTAGAATTTAGCTTTCCTATCTTAAAATACACCTTGTTGTCAGTGTATCCATTCTGATGCTGTGTAtgttaaaacaacaaattaaaggaagaaagaaatccTTTTTATGAGGAAATGAATAGCTTGGAGTAGAATATCCAAATCATTTTCTTGTAATTACTGTAATACCAGCATGGCATATGCGGACTAACACTTGGATGAAGATATGTACACCATACATGCCCAAGTTTTCCAAGTTGTATGCTGTATTGCATATGAATGACTCTATTTGGTTTTATCTTTTGAATGTTAGACTTGCTCCTAGCAAACAAATCAAGATTATTGCCTTTAACTTTAACTGTTTAAGTTAAAGCTGATGGTGAGAGGGATGTCCTGAGGCTTACGTATTTGGCCGACTCACCCGAATTACCCTAAATGCTATTTAAGTTtacattatatcatattatactatttgatttttatatgcctattaaaattatacaaaaaatttataaatatgttttgtgAGTAATGTAAtgagtgaatttaaaaaagcatatatGATTAACTGTTGATTCCTGTTTTGATTATCAGCTGCTGTTGCTGATTAAAATCCTCTGAAAACTGCACATAGCCTAAACATTTTGTACAACGCACCTCACTTACACCAAACCAGTGGAATTAGGTGACTTTCACTCAGTCAGCTACTTAGCTCATCTCGGGCtgattaaatcacattttttcttaaaaacGAAATTGTCATCAAGGGAAAATATATGTCAAACAAGCCTGGCGTGCACTGGTGTGAATGAGAAATGGACAGTGTTCAGATGTTCAGgctcagacacagagagagttaCTGCACGACAAAAAGAAGTGGAGTGCAGAGAAGAGCAGACTGTGGGGTGTACCTCCGAGGGAGACTGCCATACAGCTCCATTTCAGTCCTGTGGCGGCCCAGAAAAATGAGGGAAAAGAATgtagacagagtgtgtgtgtgtgtgtgtgagtgtgagtgtgagagagaaaagcaaacagtgaaaaggaaagaaatagagacagacagagaaaaaagagagacagtagGATAAATGCAGAGATCAGAGAGGCAAGaccagaaaaaagagaaagctgTGTCACAAATttgggaaaagagagaaagcattGGCCAAGCACATTTACTCACATGCAAGTAAGTGAACttcattgtgtgtatatgtgtgtgtgtgtgtgtacctggtcgATGGGGTGGACGTGATGGACCGGCGACCCAGGTTGATGTTGTAATATCCAGGACTGTCCAGGTCGGCCAGGGAGAAGTTGGGACCGGTAGCCGTGGCAACCGGAGCTAAAGAACAGAAAGAGCAAGAAAGAACAGAATTACTACCTTCACAGATGCATCACTTACCTATTTCAGTTTTGTATAATTTACTGTACTGGcaatttttgattttaaactACATATGCCTTGTAAGGAGCAGAGTTCTGCCTGAgggtggagctaatttctgggccagaaaaatgtaaacaaacattaTAGTTAAATAGATACCTTTTTCTATgtctagaaacacttttagCCATTTAAATAGCACCTGTTAGTGTCAGTGAGAGGACACCTATGAAATCATTCCATCACTCTATCAGAGGATGATagaagaagagaggaaatgtgtctgtgtgactCACTCTGTGACACGCGGACCAGCTCGGCCACGTTCCACACTCCTGAAGTCACAAAGCAGTCCTGGAAACTCAAGTGCCCTGGGGTGCGAGAAAGCAACAGAGaatgacacacatacacacacacacacacacacacaaaatgcttaGAAATGAACTGAACAGATTAAACTACAGCAAAGCATCCATGGCATGAGCTCAACATAGAAATGTTGTAAAATGCCGGCTATGGCTGATGGAAATAGTGTGGctggaaatgtgtgtatataagtttGAATGGCTCTGAGGTTGGGAGTCGAGGGATCACTAGAAAATGTTCCATGAACATTCCTCAAGACTCCATGTAATATCATTCAAATGTGCAAAAGTGCTGTAATCAAGCTATCAGAACCCTGCACTAATGGAGATTACACTTACCAGAACTAATGGAATACACCAGACCTTtgaagagaagtgtgtgtgtgtgcgtgtgtgtgttagaaatggagaaaaaataacTGTTATTCTATCAATGTGCAAAGTGTGAATCAGACTTTTACATCTGACTGCATAAATctaaattcatgtttttatatataattttttaaaaaaatcaacagtaccaaacatttcaaatgaaaaataataaaatttaaaatgacacTGGAATGAACATTATTTGCCCTATGCATTTATGCTGTataaattagaaattattataaattagcTGAAaaaagcactgtttttttttttttagaaaagtaAAAATCACTAGAAGGTGATTCCACAATTTTAGCAAAAACTGTAATGTTATTCTCGCCACTGatatttagtttgtttttaattttcttacaCAACACGACATCTATGTAAAAATTAGGCATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249602 lncRNA downstream 65859 13525381 ~ 13525580 (-) True G210690
XR_003402926.2 lncRNA downstream 115977 13463539 ~ 13475462 (-) True LOC113528343
TU249543 lncRNA downstream 145001 13445736 ~ 13446438 (-) True G210640
TU249504 lncRNA downstream 186082 13405139 ~ 13405357 (-) True G210607
TU249469 lncRNA downstream 196029 13390616 ~ 13395410 (-) False elof1
TU249797 lncRNA upstream 17197 13655034 ~ 13660814 (-) False G210858
TU249813 lncRNA upstream 25579 13663416 ~ 13663797 (-) True G210871
TU249833 lncRNA upstream 85714 13723551 ~ 13726829 (-) True G210886
TU249837 lncRNA upstream 94582 13732419 ~ 13786511 (-) True G210888
XR_003402896.2 lncRNA upstream 102232 13740069 ~ 13747987 (-) False LOC113527951
XM_026916843.2 mRNA downstream 93276 13494986 ~ 13498163 (-) True gadd45gip1
XM_026917009.2 mRNA downstream 156083 13432227 ~ 13435356 (-) True swsap1
XM_026916221.2 mRNA downstream 195982 13390616 ~ 13395457 (-) True elof1
XM_026917193.2 mRNA downstream 323265 13241850 ~ 13268174 (-) True LOC113528569
XM_026917090.2 mRNA downstream 364564 13223244 ~ 13226875 (-) True nfil3-6
XM_026916077.2 mRNA upstream 24326 13662163 ~ 13669491 (-) True nme4
XM_026916672.2 mRNA upstream 33072 13670909 ~ 13695259 (-) True xpo6
XM_034309975.1 mRNA upstream 58776 13696613 ~ 13702527 (-) False antkmt
XM_026916113.2 mRNA upstream 58776 13696613 ~ 13702171 (-) False antkmt
XM_026916114.2 mRNA upstream 58776 13696613 ~ 13699995 (-) True antkmt
XR_004579330.1 other downstream 192214 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 764900 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579425.1 other downstream 1032226 12548829 ~ 12559213 (-) False tom1
XR_003402937.2 other upstream 366332 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 382411 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 849984 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 882440 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 1040913 14678750 ~ 14690132 (-) False LOC113528445

Expression Profile