RNA id: TU249820


Basic Information

Item Value
RNA id TU249820
length 422
lncRNA type read_through
GC content 0.38
exon number 3
gene id G210877
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13758526 ~ 13824293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcttttttttttttttttttttgtaatgtactgATGATTGTGACTGCAGTGTGTATTATCTGATCCACAAATGGATGAAGGATGTTACAAACTCATACCTGAGTGACGAGAAGCTCATGCAGGATCAATAAGCTAATGAAAATGAGAGACATTTGAGGCATCTGCTGCTTTTAAGGCAACAGCGCTTGTAGAAATGGACACATGACCACTCACAGTCTCTGACAATCCTAACCGCTTGAACTGTGGTATGGTCCAAAATGCCGGCTATGCTTGGGGTTTTATTGGATCATTAAGCAAGATCAGCTGTGATGTGCTGACGTACCTCTCAATCTGCGTATATAACATCATTATTTTACCTTATACCCATGCATATTAGCGGCGTTGCTGTATtccatttacacatctttttttttttttttttt

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249804 lncRNA downstream 10527 13740076 ~ 13747999 (-) True LOC113527951
XR_003402896.2 lncRNA downstream 10539 13740069 ~ 13747987 (-) False LOC113527951
TU249833 lncRNA downstream 31697 13723551 ~ 13726829 (-) True G210886
TU249813 lncRNA downstream 94729 13663416 ~ 13663797 (-) True G210871
TU249798 lncRNA downstream 97712 13628793 ~ 13660814 (-) True G210858
TU249850 lncRNA upstream 18743 13843036 ~ 13844476 (-) False xylt2
TU249866 lncRNA upstream 44906 13869199 ~ 13869573 (-) True G210915
TU249888 lncRNA upstream 169703 13993996 ~ 14001008 (-) False mcrip1
TU249911 lncRNA upstream 310801 14135094 ~ 14135304 (-) True G210952
TU249932 lncRNA upstream 392380 14216673 ~ 14216872 (-) True G210973
XM_026917037.2 mRNA downstream 43071 13714400 ~ 13715455 (-) True LOC113528466
XM_034309975.1 mRNA downstream 55999 13696613 ~ 13702527 (-) False antkmt
XM_026916113.2 mRNA downstream 56355 13696613 ~ 13702171 (-) False antkmt
XM_026916114.2 mRNA downstream 58531 13696613 ~ 13699995 (-) True antkmt
XM_026916672.2 mRNA downstream 63267 13670909 ~ 13695259 (-) True xpo6
XM_026917231.2 mRNA upstream 16873 13841166 ~ 13871131 (-) True xylt2
XM_026916733.2 mRNA upstream 79865 13904158 ~ 13938439 (-) True recql5
XM_034309881.1 mRNA upstream 102109 13926402 ~ 13938439 (-) False recql5
XM_026916721.2 mRNA upstream 136208 13960501 ~ 13985023 (-) True arhgdia
XM_026916983.2 mRNA upstream 162429 13986722 ~ 13989892 (-) True alyref
XR_004579330.1 other downstream 359301 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 931987 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579425.1 other downstream 1199313 12548829 ~ 12559213 (-) False tom1
XR_003402937.2 other upstream 179876 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 195955 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 663528 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 695984 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 854457 14678750 ~ 14690132 (-) False LOC113528445

Expression Profile