RNA id: TU249833


Basic Information

Item Value
RNA id TU249833
length 2049
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G210886
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13723551 ~ 13726829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGATGCGAAAATGATCAGATCATAAACAAGACTTTTCTAACCTCTGTTTTCTGCTCCAACACCATCTGGTCCAGGATGGGCATTACCCAGTCCTCAAACTTGCAGTAGTTGTCATTAGGAACCAGCAGGTTGCCAATTCTAAAACGAGAAATTCCTACTAAAACACAGCTACTGTCACTAACGAAGTGGAAAGCTTCCAGTTGCAAGGTGGAAACATTGGAAAATCAAGCTGTTTGTAACTACTGTAATTACTATGTGCACTATGTGGAAGAGATAGACAGCTGGCAGGTCACTGATCAACTGTTTGTGCTTTGGGGAGCACCATAAACGGGCTTTGCTGTCTAAAGTCAGCTCAACTTTTTTGGAAAAAGAAGTGACGACGCAAGCATACTTGAATACATGTCAATACACGCCATCTTCCCTTAAATGACATTAGACTATGGCATTGACTACCTCCTGGGTAAAGGAGTATCACTTGCAGACACATGTGAAGCAGCGATTACGGAATCCACTGTCCATCTTCACCAGATTTTATAGACTGATTCTTTCCTTTGTCACAACCCATGAGCTTAGTGGTGTGTTTAAGTGATTCTCACCCTCATACAGAATACAGTATTAACAATCTGAGTAATTCTTATCCTCAAAAGAGTACAATACCAGCACTATAAGAGCAGCATCTGAAAGCTGAGTGATTTTTCTCATCAATAAAGAACAGTATCAAGATCATCCTCAATTACCTAACGTACAGTATCAACACTAAGTGACTGGCACTATTTGAGTGCTGTGTGTTACTCTCTGGTAAGGTATGACATCAGGATGTGTTACAAACCCTTTGCAAGTGGTCTTACTCAGAAGGAAGTAGAATATAACCTTGCATATGCGATAGTGGTTCTACGACTGAGTGGAGAAACGCCAGGGCCACTTAGGTCACTCAGGTTGACGAGAAGGCCcagtggggtggggtggggtttGTATAGGCTGCACAAATCCAGTCAAGTTAATAGGGTGACGATTTTGCTGTTCATACTCAGCAAGGAAATGAGCAAATGGAATAACTCCACTCGTTATGAAGGAAATGGCCTGGTGGTCCTCCAATCAGCCATAGAACCATAGTTACATATGTAGCCGTCCATTTTCCATTGGACAATGCAATCATCCTTAGACGAAGCCGCAGCACAGTTGTCAACATTCTCATcccagtttttatttaaacagattttgCATTGATGTTTACAGCTCGCTCCCTCCTTTGATGGACAGCTAAGATGATCTAACAGTTCTGAAAGACTATGAACGTTCTAACCTTTCCGACGTTTGTTCTGGACTCTTCTCAGATGCATTTCTCATGAAGCACAAACCATGTTTTCGTTGCTATACATCTTGGAGAATATTAATAAATCTCTGTTCCACATTTTAGGAGTATACCACCACCAGAGCAAATCCTGAACATCTATGTAGATAAGAGTATCCAGGTAGGTACTGGCAAACAAATCTGGTATTTAGTTAGTGGCTCACCTATTGATGCCTCTCTGTCGTAGCTCTTTGCCTGGAAGGCTAAACTCACCCAGATAGGTGGGAGCCAAACATTTAATGAGATCTTCCTCTATACCTCCTGCTGTTGTCACTATCACCTACCATTTTGTGCTGGACAAGGTAGCGGATGGTCTCACGGACGCCAGAGCTGATGAGGTTGGACGTGTAGCCTAAGAAGATGGTACATCCTGACTGACTCTGCTGAGAGTCATAAGCGTTTTCCTGCTCTTCTACAGGCTCCAGTCGTCTGTCATCTTATTGATCTCCTGTACAGCCATGGCAAAACTGCTAGCCTGGAAGCCCGTGGTGAGGTAGGAGTGCAGCAGAGCTCTGTGGTCTACTCCCTGATTAAAATCATAACCTCTGATCTGTGGCATGTCCTCTGGGAGAGCGCCACTCTCTTTCAGAACAGCGTCTCGGGCCACGGAGGGGACCTGATCTGCCATATTTActgagaggaaagaagaaacTTGACCATGTAGTGAAGGAACACTCAGTTTAAACAAAGAGCAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249813 lncRNA downstream 59754 13663416 ~ 13663797 (-) True G210871
TU249798 lncRNA downstream 62737 13628793 ~ 13660814 (-) True G210858
TU249797 lncRNA downstream 62737 13655034 ~ 13660814 (-) False G210858
TU249799 lncRNA downstream 85714 13591439 ~ 13637837 (-) False G210858
TU249602 lncRNA downstream 197971 13525381 ~ 13525580 (-) True G210690
TU249837 lncRNA upstream 5590 13732419 ~ 13786511 (-) True G210888
XR_003402896.2 lncRNA upstream 13240 13740069 ~ 13747987 (-) False LOC113527951
TU249804 lncRNA upstream 13247 13740076 ~ 13747999 (-) True LOC113527951
TU249820 lncRNA upstream 31697 13758526 ~ 13824293 (-) True G210877
TU249850 lncRNA upstream 116207 13843036 ~ 13844476 (-) False xylt2
XM_026917037.2 mRNA downstream 8096 13714400 ~ 13715455 (-) True LOC113528466
XM_034309975.1 mRNA downstream 21024 13696613 ~ 13702527 (-) False antkmt
XM_026916113.2 mRNA downstream 21380 13696613 ~ 13702171 (-) False antkmt
XM_026916114.2 mRNA downstream 23556 13696613 ~ 13699995 (-) True antkmt
XM_026916672.2 mRNA downstream 28292 13670909 ~ 13695259 (-) True xpo6
XM_026916044.2 mRNA upstream 37066 13763895 ~ 13809443 (-) True LOC113527894
XM_026915996.2 mRNA upstream 88897 13815726 ~ 13833885 (-) False zgc:112183
XM_026915995.2 mRNA upstream 88897 13815726 ~ 13833051 (-) True zgc:112183
XM_026917231.2 mRNA upstream 114337 13841166 ~ 13871131 (-) True xylt2
XM_026916733.2 mRNA upstream 177329 13904158 ~ 13938439 (-) True recql5
XR_004579330.1 other downstream 324326 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 897012 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579425.1 other downstream 1164338 12548829 ~ 12559213 (-) False tom1
XR_003402937.2 other upstream 277340 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 293419 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 760992 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 793448 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 951921 14678750 ~ 14690132 (-) False LOC113528445

Expression Profile