RNA id: TU249837


Basic Information

Item Value
RNA id TU249837
length 1616
lncRNA type sense_over
GC content 0.36
exon number 3
gene id G210888
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13732419 ~ 13786511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATACTTCTCCCTACCTCGTCTTCTCTATGAGGTTCATTAGTGGTAAATACTGCCCAGGTTGCCATTGCTGTCAGCAGAAATGGAGTTGGTCTGCTATATGCACAGTTTTGACCCTGCTTTCCTGATTTTGAAAACATTGTTATATGTGCAAGTTATTTAAACTGAAAAGTTAAAAAGCACCTATTGAAAGCAGTTTTTTATGTTAGttaatgtgtgtagtgcagcagttTGCAGGATTTGGAAATGAGATATCTAGGTATGACAAGCCACCAACAAATGAACCTCTCTTTGGTTGTTGgtgaggaaaaaagaacaatgGTGACTGCTATATCAGCATTCTAAACTATTCTGAAACTATTTCTCCATCAGAAACTATTTCTCCATCAGGCAactacaaataataaaaccaaCAGCCCAGACACGTAGCCTCTTCCCAGGCATCCTGGTTTTGATTTGTCCACTCATAGTACACAACTtttggtattcagaggaaacatcACATGAACCTAGTAGAGCATTATGGTCTTGAAACACttaaccttgtgtgtgtgtgtaatagtttgccccacatcCTTCTTATTACACCACTGATGAGACCTGGTAATAAAATGAACTGCGCATTCCTAACAGTTTCATTGTTGAGCTACTGACAGATTTTAGCCCTTCCATGTAATATCACTAAATAATACCATAATTAGCATGACAGCACAACTTGGTTGGAACCACACACCTGACGGCAGATGTTTCACACATGTTTAAAGGAAAATGCAAATCTTAATCCCTATTTGGATATATTCATTTCTCACTCCaatgtttgtaataaaatgaaatctgtAATGTCTCCTCCATGATAAAGCTCTCGCATTCCAGGGGCTTGAAAgatttcagctgtttttttttttctttctatgaaCCCAGATGATTATATCATAAAAGAGGCCATAATCACATGATGATATATGATGTCATGCAAATGTAAAACAATACTACATATTCACAATCTTcaacaaaaatttaaaattcacatAAAACAGGTCAATAGCTGAAACAATATAGCATCAGTCTGACCCATTCAAAATGTCTTTAGTTTtctttgatcattttttctattattatagTGCGACAGTCTATCATAAGCCAGACTAATAAACACTTGCATGCtgttgcagcaaaaaaaaaaaaaaaatgCTTCTTTCAAAGTctttaataaaagcatttattttatatataacgtGTCTTTCGGTGTACAAACTAAATTTCTCTTAGCCtaaacaaagaagaaaacatgaaGTAACAAGTAAAAAGGGGAACAAACGATAGTTACccaaaagtataaataaaacctCAATAAGAAGGCAAATTAAATAGGCATAAAATAATTGGGCAGCTGTGAACAAGTAGGTGGAATCAGgacaaacagacacagacataacaaacaaaaaaagtaaatacaaaaTAGGAGGTGAAGGAAAGacgtgaaaaagaaagagaaaccaCAGGAGAAATGAGCAGGCAGTGTTAATCACTCTTTCTATCTGCTGTCAGTTTGCTGGCTTGATGTGCAAATGTCTCAGCCACCAGCAGGGGGAAGACTATAGAGGCATCTGCATAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249833 lncRNA downstream 5590 13723551 ~ 13726829 (-) True G210886
TU249813 lncRNA downstream 68622 13663416 ~ 13663797 (-) True G210871
TU249798 lncRNA downstream 71605 13628793 ~ 13660814 (-) True G210858
TU249797 lncRNA downstream 71605 13655034 ~ 13660814 (-) False G210858
TU249799 lncRNA downstream 94582 13591439 ~ 13637837 (-) False G210858
TU249850 lncRNA upstream 56525 13843036 ~ 13844476 (-) False xylt2
TU249866 lncRNA upstream 82688 13869199 ~ 13869573 (-) True G210915
TU249888 lncRNA upstream 207485 13993996 ~ 14001008 (-) False mcrip1
TU249911 lncRNA upstream 348583 14135094 ~ 14135304 (-) True G210952
TU249932 lncRNA upstream 430162 14216673 ~ 14216872 (-) True G210973
XM_026917037.2 mRNA downstream 16964 13714400 ~ 13715455 (-) True LOC113528466
XM_034309975.1 mRNA downstream 29892 13696613 ~ 13702527 (-) False antkmt
XM_026916113.2 mRNA downstream 30248 13696613 ~ 13702171 (-) False antkmt
XM_026916114.2 mRNA downstream 32424 13696613 ~ 13699995 (-) True antkmt
XM_026916672.2 mRNA downstream 37160 13670909 ~ 13695259 (-) True xpo6
XM_026915996.2 mRNA upstream 29215 13815726 ~ 13833885 (-) False zgc:112183
XM_026915995.2 mRNA upstream 29215 13815726 ~ 13833051 (-) True zgc:112183
XM_026917231.2 mRNA upstream 54655 13841166 ~ 13871131 (-) True xylt2
XM_026916733.2 mRNA upstream 117647 13904158 ~ 13938439 (-) True recql5
XM_034309881.1 mRNA upstream 139891 13926402 ~ 13938439 (-) False recql5
XR_004579330.1 other downstream 333194 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 905880 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579425.1 other downstream 1173206 12548829 ~ 12559213 (-) False tom1
XR_003402937.2 other upstream 217658 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 233737 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 701310 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 733766 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 892239 14678750 ~ 14690132 (-) False LOC113528445

Expression Profile