RNA id: XM_026917231.2


Basic Information

Item Value
RNA id XM_026917231.2
length 5734
RNA type mRNA
GC content 0.46
exon number 11
gene id xylt2
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13841166 ~ 13871131 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAACATGATTCACTGCTCAATGTGTAAAGCACGGGGAGGAAAATGGTGGCGAGTACTCGTGTACAGAAGCTGCTCCGTCGATACAAACTTGCCATAGCCGCTGCTTTAACAATTCTCCTCATCCAAGGGCTGGTGGTATGGAGTCTCCGGAGTCTGGAGGAAGGAGAGGCCGAGCGCAGGGAGCGGCGGTCTAAGCTGCCTGATCACAACAACCAGGATGTGAGGAGAGACTCAGAAGCCAGGGGGCAGAATGCTCTGTCCGGGGGTTACCATGGCCGGGGGAAACATGACCTGGAGCGGCCTGTTGTCACTCGTCCCCACAGGAAAGGGGGAAAACGAAGAATGAAGCCCTCCAGGACAGAAGGAGCCGGAGTGGTGCAGGGCATTGGAGCTGTAGATGCCATCGCCCCGTACGATCCATCCAGCAGCCGTAACTTCACCGATATGAAGGGGCAGGAAGGAGGAAAATTCCCAGCAGGCGCTCAAGGAGAACCGGGGAGCGTCGACGGCGCACCTCAGGTCCCGAGCAACGACTTTGTGCCCAGCTGTGACATCGTCGGGAAGGATGCACTGTCGGCTCTGCACCGTGCTGGATCACGCCAGTGCCGGCAGGAGATCGCCAATATCGTATGCAAGCACCAGGCTGGAGAGCTGATGCCACAGGCTTTACCTCAGTACTGCACACAGCATGTCCTGTCCAGTGCCGGCCAGCAAGCTGACATTATAGACAACGATTTGTCCAAAGTGGAGAACCCAGTCAGGGTGGCGTTTGTGTTGATGGTTCACGGTCGTGCCGTGCGGCAGCTGAAGCGGCTCCTCAAAGCCATTTATCACAAAGACCATTTCTACTACATCCATGTGGATAAGCGCTCCAACTACCTGCATCGTGAAGTTGTGCACATGGCTGAGCTGTACTCCAACGTGAGGGCCACACCCTGGCGCATGGTCACTATCTGGGGCGGGGCCAGTCTGCTGAAGGCCTACCTGCGCAGCATGCAGGACCTGCTGTCCATGCTCGACTGGAAGTGGGACTTCTTCATCAACCTCAGTGCCACTGACTTCCCCACCAGGACCAACGATGAGCTGGTGGCTTTCCTCTCACAGAACCGTGACAAGAACTTCCTGAAGTCTCATGGCAGAGAGAATGCCAGGTTCATTAAGAAACAGGGGTTGGACAGACTCTTCCACGAGTGTGATAATCACATGTGGCGGCTGGGCGAGCGCACCATCCCCGAGGGCCTGGAGGTGTCTGGTGGCTCTGACTGGTTTTCACTCACGCGCCGCTTTGTGGAGTATGTGGTCAGCTCCAAGGACGAGCTGGTGACCGGGCTGAAGCAGTTCTACACCTACGCCCTGCTCCCTGCTGAGtctttctttcACACAGTGTTAGGCAACAGCCACATGTGCGACACGCTAGTGGACAACAACCTGCGAGTTACTAACTGGAATCGCAAGCTGGGCTGCAAGTGCCAGTACAAGCATATAGTGGACTGGTGTGGATGCTCTCCCAATGACTTCAAACCTGCTGATCTCATCCGAATTCAGCAGCTGACACGGCCCACGTTCTTTGCCCGTAAATTTGAATCCACCGTCAATCAGGAGGCCATTGATATTCTTGATACCCACCTGTATGGGCACTACCCTCCAGGCACTGCTGCACTCAAGGCCTACTGGGAAAGTCTGTTTGAGCGGGAGGATGGTGTGGGTACTCTCAGCGATGTGGCACTCACAGCCTACATGTCCTTCTTCAGACTTAGTCTCCAGAGTCAGAAGAACATGCAGGAGGCCTGCAGGTTTGTGCCTGTTGGCTACCCCATATCTGTCCATCTCTATTTCTATGACGACCGTTTCCAGGGCTACCTGGTGCGCCAGGAGGTGAAGAGCATGGCGTCTGGGAAGAAGGAAATGCTGGAGGTGTGGGTTGTTCCTCAGGCCACACTACAACTAGAGAGCAACCTGAATGAGTTTGAGAGGCTTAAGAACCTCGAGGTAGGAACAGAGTGGGACCCCAAAGAGAGAATTTTCCGGAACTTTGGTGGAGTGATGGGCCCTTTGGATGAGCCTGTGGCGGTGCAGAAATGGGCTCGTGGCCCCAACCTCACAGCCACCATAGTGTGGATTGATCCTGCTCAGGTGGTAGCAGCGTCTTATGACATCAGCGTGGATGTAGAGGCGGAGTTTACACAGTACAAGCCCCCGCTGCAGCGTCCTCTCAGGCCGGGAGTATGGACAGTCCGTGTGCTGAGGCTATGGGAGCGTGTGGCCGAAGCGCGCTTTCTGGTCATGCCTCTGGTTTTTAAAGGAAAGGAGCCATTTCGCAAAGAGGAGCACAGCTGGCTGCACGCAGGCCCTGCAGGCAACGTTTACTTGGAGCAGGGCTTCCAGCAGCTCGCTCAGGTTCTGAAGCTGCCTCCCATGGAGCCTGCCCTGGAGGAGTCTCAGAAGAAGGCCTCTCTGGTGGGCAAGGCTCTGGAGGGTTGGGTGGACAGCTTAGTGGGTGCCTTCTGGGTAACTGGAGCCATGTGTTCCACTCAGACGTCCCTCTGTCCCAGTGTACAGCTGTGTGCCAAAACTAGCTGGAGCTCCTTGTCCCCAGATCCCAAATCCGAACTCGGTACGGTCAAAAGCAACGGCCGCATCAGGTAGCCCGAAAGATTGGGAGAGAACAAGGGTTAGAACACTAAGGTGGACTACAGGGGAGAGTAGGGCCCCTGGGAGTGATGTTTACAGGATATGGGTCTCTCGGATCATCCCACTGTTTTCTGGTCAAGGCACCTTGTCCTGAGGATTGGTGTCAGGGACAATCTAAGAGAAGAATTAATTGACATTTGCACATGAgaacattttctaattttaaagaATCATTGTTCATAAACGTTACAAGTTTTTTGGGGTGTGTCCATATGCAGTCTTAATTTGACTGGATTGATGATGCAAAGCCGTTAacctcaagtttttttttttttcctagtttcAGAACAAATCAAAAAAGTGCACATTTTCTtctgtgtatacagtatttgtagccaattttttaaatttaagctTTACTCTACCTGTCAGTGGTTGGAGTCCTGCAGCCCAGTGGTTCTCTTATTGAGGTGTGTGAAGCGTAGCCAGGGGGTccgtgaggttttttttttttttttaaattttgttttattttgtgttggaAATCACACCCCGCCATTAGGAAAACtgttatatacattataattgtgttcttatagttattagccagtTTGACTGGTTACATGAATTAAGTAGGTTTTACGCCATTCTCaagaactgaaaaacaagtaggcctataaataatctCAGCAAAGACCTAATGTCTTGtatcagtggaaagttcaggaagaAAATACTTTATGGCTCCAATTAATACAAAAAGAttattgtacacacacaaatgatttAGAATTGTTGAAATCAGTGTTGGAGGTTCTGCGGAATATATTTTagagttaaaggggtccctggctgcaaaaagttttagcctgtaattattattattattttgatttccAAACTTCAGAAGCCGATTGATAAAGTGCACTTTACTGTAAGAGAAATGTCTGAATTACAGACAACAATGTGGAGCTTATGAAGTCACTCGGGTGGCCAAATGATCAGTGGCTCCATTTGAGAATATTTCAAGTGCTGCTTATAGAGTCACACTTTCACCATCATGTGGATCGTGTAGAGTTTAGGAAATGAGCAAAATGGACAAGCGCCACTAAATGTCCATGTCCATCAGAAGAAAAAActgttgcttgtgtgtgtttggtaatGCTGTGACTGcctcctttgtgtgtgtttggaatggCTTCTTTTGAAATGATGCCATCTAGATGTTTaccactgcatttttttttttttttttttttcgtttaaaAGCTAAGGGTGCTACGCAAGCACATGGGTAGTATCTCTAGCAGCTGAATGAGCTGACCCTTCTGAGGATCAGTGGAAAGACAGCTTTTTCATTATCTTGCCCTCCAAACGTAAATGCTATGAAGGCTGAATCTGCCACTAATTCATGATCTTTGTAATCCCATCTGTTGTTTCTAAAGGTCAAACTGTGATGGACGATCACACAGGACGATCACACAGGCATCTTGGTACTCGCCCAGTTTACTGCAGAATTATAATAGAAAGCTCCTGAGTAATACAGCTTATTGCTGTTTCTAAATCTTAGTTACATTCGTAAAGGATTCTGTTTCAGCCTACTACTGCAATGCAGTACGTCGTCATGGTGAACGTCTAAATGTATCATCAATGAAGTATGGCATTATTCATTGTCACAATTGTGTCAtatgttattttcattttcttcaatATTTGCATAAGATTTTCTTTTCTGGGTTGGGAATCCAGTGGTGGGCAAATCGTAAATCCTttagctagcccactgggcAGGTGAAAGCTCTGTGATGACGCGTGCTATGTATTTTTTGACCGGAAGCCTGATTGACAAGGCTAAAAattggtagctaacataatctAATGAACTATGGCCAagtagttaagtgcattaatacaaccACAAATTGAGAATATATAAACTCCAACTCGGCCATGGTAATTATCCTTATCCATATTCTAAGCAAGTGTCTGAAGTGGCACATCATATTTGTGCCCTTGataaaaagtcagcaagtcactGGTCAGCTTTTTGGCTATGATCTgtagcattttcttttcacatcaCAGATAAAAGATATCGTTTGAGTCTGGCTagcttctttattttctctcgacTGCGTGTAGTAAGCAGGAGAGTTGTGCTGCACTTTCTGTTGCATGGTTTTGTCAGGGTTTCCACATATCTGCATGGTTCTggttctgaaaagatcatctgtATGTCATGCATGCATGCTAATTTATCCAACTACTGAAAgctggtgtgtgtagtgcagcaggtggtgggattcagaaCGAGTAACACGCGCTATAGTTTTTGTTTGGTGTGTTTAAACAAAACGTACTTGACGGTGATGCACAATGCTGTGTCACACCGTCAAGTGCTGTGTTTAAACATTGCAAACAAAAACGTTTGTTTTGCAAAAATCaatagctttttttccccctctagTTGTTGaatgagaaggaaaaaatgCTAGTGGGTGCTTGGAAATAAAAGTTGTATGAATAAAAACTAATAGCATATACATGTCACCTTGTTCTGGGAGCCcaggctagtgatttgtccaccccgaGATGCATCACCGAATGGGTCAAACTGGCTTCTTTTGCACAGCCAATAAAGAATAATTCtttcatggtgtttttttttttttcccttctaaaCTCACATTTCAATTGGTTGTGACTTTCTGTCACATGCTTCAGAGAAGCCTATTGTTTTAGGACAGTAaatggtctgtgtgtgtatgtatacatacatatctaTATAAAGTGGTGCATTGTGAGAATcaatggattatttttgtatttataattcCTCCTGGAGAGGGAggtcatattttttatctgttagTTATGTCAGGATTGCTGCTTCAGTCTAGTCTGTTTCATGAAACTTGTTGTGCATTATCTGTGTCTCATGAAATGGTACCTCGATTGGAGTTGTTTCTAGAGTTTTAAAAGACATTGTGTTGAGTGGCAGCGATGGCTTCACTGTCGAGATGAGTGTTTGGAGAAATATGGTGAAATTGAAGAGCAGAGATGTTTCTGTTCCAGGCacaataaatatgaaatcaATGGTA

Function

GO:

id name namespace
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0030158 protein xylosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249820 lncRNA downstream 16873 13758526 ~ 13824293 (-) True G210877
TU249837 lncRNA downstream 54655 13732419 ~ 13786511 (-) True G210888
TU249804 lncRNA downstream 93167 13740076 ~ 13747999 (-) True LOC113527951
XR_003402896.2 lncRNA downstream 93179 13740069 ~ 13747987 (-) False LOC113527951
TU249833 lncRNA downstream 114337 13723551 ~ 13726829 (-) True G210886
TU249888 lncRNA upstream 122865 13993996 ~ 14001008 (-) False mcrip1
TU249911 lncRNA upstream 263963 14135094 ~ 14135304 (-) True G210952
TU249932 lncRNA upstream 345542 14216673 ~ 14216872 (-) True G210973
TU249956 lncRNA upstream 423176 14294307 ~ 14298198 (-) True G210997
TU249962 lncRNA upstream 458455 14329586 ~ 14329920 (-) True G211003
XM_026915996.2 mRNA downstream 7281 13815726 ~ 13833885 (-) False zgc:112183
XM_026915995.2 mRNA downstream 8115 13815726 ~ 13833051 (-) True zgc:112183
XM_026916044.2 mRNA downstream 31723 13763895 ~ 13809443 (-) True LOC113527894
XM_026917037.2 mRNA downstream 125711 13714400 ~ 13715455 (-) True LOC113528466
XM_034309975.1 mRNA downstream 138639 13696613 ~ 13702527 (-) False antkmt
XM_026916733.2 mRNA upstream 33027 13904158 ~ 13938439 (-) True recql5
XM_034309881.1 mRNA upstream 55271 13926402 ~ 13938439 (-) False recql5
XM_026916721.2 mRNA upstream 89370 13960501 ~ 13985023 (-) True arhgdia
XM_026916983.2 mRNA upstream 115591 13986722 ~ 13989892 (-) True alyref
XM_026916984.2 mRNA upstream 115591 13986722 ~ 13989890 (-) False alyref
XR_004579330.1 other downstream 441941 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 1014627 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579425.1 other downstream 1281953 12548829 ~ 12559213 (-) False tom1
XR_003402937.2 other upstream 133038 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 149117 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 616690 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 649146 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 807619 14678750 ~ 14690132 (-) False LOC113528445

Expression Profile