RNA id: TU250187


Basic Information

Item Value
RNA id TU250187
length 1619
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G211187
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14588820 ~ 14594664 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATAACAAATCCTATAGCACAGTAGCACAGATAAAGGAATTTTGAAATATGTATTCCCTGAGTTAAGTAAACTTACTGTAGTGTACTCAAAGTAGTAAAGGCAGTTGTCTGTGAGAATGAACCATCGTCTCTTCCAGGTTTTGACACGTCCACCTCCCAGTTTGAGCAGCCAGCCCTCCCGGTCAGGgttgaagaatgtgtgtgtgaggtcgtTGCCGTCGTCCTCTGGGATTTTGAACGGCTCGTTCTTGATGCTCTCGTACAGGTTCTGAAGAGGACCGAGCCGAAGAGGAAGCAAACGAAGAAGCAGATGGGAAAAGAACAGCGATTTTAGCAAAACAATACGAATTCAACATTACACTGttggttcttcaagggttctttgaacAGTTATTCATCCGGACAGGGACAGCGTTTCTTTAAATGGGCAGTGAATTTGAGATCGAACCGTGTATGCTTGTACACGGAGTAGAGATTGCTCGAAACAAACTGCAAAAACTCAAATCATTCTCGAATCAATCCCTAAACGAAGCTTCGAGTCATCATCGATTATGGCATTACAGGAAAAAACATCGATACAGAGTTTCACCTGAAAGTGCCCTACCTTCTCGACACACACTTCAAAGCTCTGGTCCTCAGCAGAAcatcactaaaacacactaatgtGGTGTAGCCATAAGGGAGATAAAATCACTGcatgatctgtacaattaaattgaGAAATGCAACACACTCGTGCGCATCGGGTCGATGACAGACAATCGTAGGCGTGGTCATTTAAACTTCATCATTAAAGGCATGATCTACCATCAAACAatcttgccatattaataacgCTGCCATTATATATCTTTATGAGAGCTCTTATAAAAAGCAGATCtacccttctttctctcttcctacAGTAGATCTCTAGTGCTTCATTGGCGGTCATCTCGGAATCCCTACATTCAGTTTGTAGCTAGCTGGATAGTAGCTTTGGGAAAAATGcatgatcctgattggttaattctgttTCTCACCATATCACCTGGGAAGGACGTGTTCATTTCATGCCATGGCCGGTTATATATGCggaagattatttatttattgaatttttatcAACATCTGTATAGTGCAGTTACTGCACAGAACAATGTTATTTCACATGTGTATAATCAGCTTCACTGCAAGCACACGTTATGATAATCATCCAAAATAAGCATGTGGATGAAGACACATGACAGAATAAACACCAGACGTTTTTAAGCTTCATTGCACCTTTGAGACTGTCAGGTCAAAATGACTTGAACACAATCCGTaataatttttacaaaaatcttATCTAatcttttaatgtttattaaaatttactttttaaaatcatactACTAAtacctgtaataataattatgtaatgtTGAAAGGAGTTTTTAAACGAAAAGTGGAGACATTGagggaggaggaaagaaaaaaaaagacagactgaCTCGTAGCAGCTCCTCTGGTAGGTCTCCGCCGTCATTGATGCCTCTGTTCATGGAGATGAAGCGCTCCACAGTGGGCTTGTCTTTCACGTTGGGGTTGTGAAGGCTGGTGTTCAGCATGATGATGGCGAAGGAAAGGATGTAGCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250024 lncRNA downstream 126411 14461792 ~ 14462409 (-) True G211054
TU249962 lncRNA downstream 258900 14329586 ~ 14329920 (-) True G211003
TU249956 lncRNA downstream 290622 14294307 ~ 14298198 (-) True G210997
TU249932 lncRNA downstream 371948 14216673 ~ 14216872 (-) True G210973
TU249911 lncRNA downstream 453516 14135094 ~ 14135304 (-) True G210952
TU250196 lncRNA upstream 24568 14619232 ~ 14621782 (-) False G211195
TU250195 lncRNA upstream 25110 14619774 ~ 14621782 (-) True G211195
TU250303 lncRNA upstream 232571 14827235 ~ 14844312 (-) True G211269
TU250308 lncRNA upstream 252588 14847252 ~ 14847456 (-) True G211274
TU250394 lncRNA upstream 340005 14934669 ~ 14935121 (-) True G211346
XM_026917053.2 mRNA downstream 123529 14463405 ~ 14465291 (-) True LOC113528481
XM_034310045.1 mRNA downstream 137225 14447240 ~ 14451595 (-) True si:dkey-282h22.5
XM_034310046.1 mRNA downstream 137272 14447240 ~ 14451548 (-) False si:dkey-282h22.5
XM_026917155.2 mRNA downstream 156100 14414913 ~ 14432720 (-) True LOC113528545
XM_034310307.1 mRNA downstream 178144 14394229 ~ 14410676 (-) False LOC113527937
XM_026916985.2 mRNA upstream 84086 14678750 ~ 14690132 (-) True LOC113528445
XM_026916905.2 mRNA upstream 97529 14692193 ~ 14709079 (-) True LOC113528386
XM_026917075.2 mRNA upstream 138239 14732903 ~ 14738583 (-) True fscn2a
XM_034309677.1 mRNA upstream 173943 14768607 ~ 14840369 (-) False LOC113528036
XM_034309678.1 mRNA upstream 173943 14768607 ~ 14840369 (-) False LOC113528036
TU250141 other downstream 67845 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 98045 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 559179 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 582308 14004169 ~ 14006512 (-) False LOC113528401
XR_004579330.1 other downstream 1189595 13395466 ~ 13399225 (-) True LOC117598755
XR_004579411.1 other upstream 84086 14678750 ~ 14690132 (-) False LOC113528445
XR_003402969.1 other upstream 877113 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2698187 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2698187 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2698187 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU375031 True 225 lncRNA 0.48 2 CI01000112 2748214 ~ 2755106 (-)