RNA id: TU250303


Basic Information

Item Value
RNA id TU250303
length 3860
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G211269
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14827235 ~ 14844312 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACATTCATGTGCTGTTGGTGGGCATGCAaagctttatttaataatataactgCACAAAAGAATCAACCAAATGGAGTTATTTTAATACCACTCTGCATTCTGAGCTTCAtaatctattattaaaaaatggctACATAATTTACTAgtctttttatataaatattaaggACAAGAGACCCTAAAAGTTCAGCTAATCTCACGTCTTTCAGCGTTTTCAATTATGGCAGCTCAAAATGGCTTCCAATCTAAACCTGTCAGGGCACGGTCGttttaaattattcatacagattatatggatttttttttttTTAAACCTAGTTTTCTGTTTCATCTTTCAAATGACAGTGCTGTGAGTCTTTTGAGTGACATTTCGAGCAGTGCATGCTCATTCCTACCCATTTGTTCTGCACATTTGTGCCATTTGGGGaaaaagacaacaacaacaaaaaaacatggtcACACTTTGCGTGTTTGGCATGAGGTCTGGGCTGGCACGGACATTTGAAAAGCAGAGAAACAAATAATGTGATGAGCAGTCATGACAGTTGGATAATGATGCTAGTGTCCGTGTTTGCAAACGGGTCAATGAAGACCCTCTTGTAGTACCTAGTGTAGCATCTTAGAAACCGTGCAGCTTGTTTCTCTAGAACTCTGGCGAACCCTCTGGTTTGCGTGTGTATTCTTGCTGGTGGTCCAAAATCTTAAGTAACCCGTTTTCCagttctgtctgtgtttgttcaACGTGCAGGAATCCGCTCAGAGATGGTGTGGacgcctgtgtgtctgtctaccTGCTAGGTTGGTGGAACCTATTAGGGTCAAGGTTTATTTGTTGATCGTGTCAGCAGTGCACGGCATCACTGGGGGGTGAGAGTCTGCCTGAGGTGTGTGAGAGCCGTCAATGCATATGTGTGCGCAAGAGAGTGCCAAGTGCCCTACAGTGTAGCAGCGTACCTCACCCTTCCCACACTGCGGGCCAGGCAGGTCAAACACAAAGGAGACGAGCAGGCCGGGCAACACCTTCCTGTATCGCGTTACCAGTCTTTCATTTCAAAACGCCACTGTCTATTTTTACACTTCAGCTGAGTAAGCGCCATTCAGCataggaagagagagagagagggggggagagagaggagagagatgccAAGGCAACCAGAACAAAGAGATATTTAGAGAACTTGGAAACAGGTGAAGTAgattcttcctttctctctcactccttcttccttccttccttcctttcttcctttcttcttccttccttccttccctcattcattcattcattcattcattcatccatcctaGTCATAGAGATTATAATAGCTAAAAGACCTGAGGTGTTATGTATAAAATTCTTCCTGgatttaaaaccaaaaaaaaaaacgcatttCTGGACCCCAGATCCTGTACATACCTTTCTAGAATAtgcaaaaaactgaaaataaccCATAATGTTCACTCTCTTGCTAAGACACAATGGAAAAAGCTGCAAGTAAACCAATCAAAAGGAAAAACTACAATGATTGTAAGACATTATATAAGTGGCACTCTGTACAAAAGAAATACgaaatataattacatataatcTTCAAAACATGTCTCGATATAATTTGTATAAtccaaaaatattttgacaGAATTCTCactattacatacatttatgttttttcttccttACGACATATATTTAACGTATATTTTGAATCTAAGGAATTGGAATGTAGTCTGACGTGAAAGAAGAGTCATTGCCCTCTGGGTGAGTCGATGCTGAATCATTGTAAATAAGTCCAATTTAAAGGAACGTTTCCTGACAGAAAGCAGCCAGCACATGCAAGGTTATGCAATGTTGTTTTCTCTGTTTAACACAGGCAATATAAAGGACTAACATTAAACGTCTTATCTTACCAACAAGCCAGCAAACTTGCACAACTCCAACCTGAATTGTCTTTCCAGCACTGTTCCTCAGAACGCAAGATATCACTGATtgagtgaaaatgcttctggcTGACATAAGCACATTCATTCCCTTAATGTCCTTTATTGCATTGCAAGAGCAACTGATTgcgtatacagtatattctgtgATATTGAAATATTCAGGTAGTTTCACTATTTTGAAATTTGGAGTTTTCAGTATAAAAACCCAGAAAGACATGTGTCTGACTTAAGGATTACTTTTTATATGGAACAACTGACGGAAACTGACTTACACAACCTTTATGGTGTGTTTAAAACGTTTATACACGAGTCTTCTGGAGATCTATAGCAGAGGTTGAACCGGTGTTCAGCTGCCAATAATAATTTGCTTCATATGTTCATGACGCAAAAATCAGAAGACGTTCTGAGGCGGGCAAAGCATTACATTTTTTGTGATTGATGCTCGTGAATTGTGTTTAACATCACATGAACTaataaggagaaaaaagatCAGAAAAAAGATCCTTTTTAATGTCAGATTGTCTTTTAAACTCGCTTGTTTCCATCTCTTTACATCTCGATTGTTGGAAAAATATTTCGAAGACTGaatttttgttcattattccacagaattcttgaatctgattggtcagaaagtgattaattttctgtaacagcacggcttggacagtagttctgACTTCAAGGTTTTTAGCCTGTAATGCATTAATGCGTtgctgtttctatagcaacaattTACGCAGGGACTTTGTGGAGGGGATTTAAAAATGCGTGTATTCATTGATATGGTcacgttttctgtgaggatgtgtttatttagcatttttggagggagtctccaatgtcagcacttCGTAACAGCTGTAAGTTTAAATTTTCAGGATGGAGCGCTTTGAcctttctggtttctcaatagcttgacaagctgcatttttttgtctaattaacttcgagagagagaaaaaagggctTATGACGGagtgactatttatagctgctgtaacgtatatgataacaggaacaaccTTGCCTTGAGGATGTTCCATTCATTCGGGGTAACTGATAAAAACTACCATAAAAAAACTAACATTTTAAGTGTtgccaaactgctgtggtataagaggaataaaacacttcaggatgtgctgttatgggaaaataattgaCTTTGCTTTACATTGGGTTGCATTGCAccactctgtcattgattattttcctataacagcaagtgtcTCATTCCATACATAATTTATACTGGGCTGTAAATACAAACAGTCACAGCAAGATCAGTGTATACTTTTTTTCAGGACAGGACACATTAGCAATCCTTAAATCCTATCAATGTAAAAACAGAAGGCATGTGGTGAATACGTTGCCTTGTCAAATCTCTGGTGGAATCATGGGTAGTTATAgatagttatatagttatagcTATACATGCTCTACCAGCAGACTGTGGAGATTTTTCAAATGGAATGAGTTTCAGAGAGGCACTTGTGTCAGTGAGGGATTCTGGGAATCGAGTTTTCAATTGGCGATGTTCAGGCGTGCACAGATCTGGTCGTTTCCTTTTGTGTGATGCATTATTTGAAAAGCCATCTTGCCTTAACACCCTTGAGTTTTGATTCGTaatggttttaaaataaaaggctctttctgtctgtctgtctgtctgtcttcctctttCGTCTCACGGCTTCCCATCAGGCTACCTGTGTGCCTCCTGCTACATCGCACATGACATCTGTTAGTCATTATTAACATCGGACGCACAAAAGCCAGattatgtgtttttaatttcagttttattattgGATTCTCAGAGAGGGCCGTTGTGGAGAGGACGGATTGTGAGAGCAGGTGGGGAGGCGTGCAGACACAGACCCGATTGTCTCTCTAGGGAACTTGTGGAga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250196 lncRNA downstream 205453 14619232 ~ 14621782 (-) False G211195
TU250195 lncRNA downstream 205453 14619774 ~ 14621782 (-) True G211195
TU250187 lncRNA downstream 232571 14588820 ~ 14594664 (-) True G211187
TU250024 lncRNA downstream 364826 14461792 ~ 14462409 (-) True G211054
TU249962 lncRNA downstream 497315 14329586 ~ 14329920 (-) True G211003
TU250308 lncRNA upstream 2940 14847252 ~ 14847456 (-) True G211274
TU250394 lncRNA upstream 90357 14934669 ~ 14935121 (-) True G211346
TU250411 lncRNA upstream 134307 14978619 ~ 14983132 (-) True rac1b
TU250397 lncRNA upstream 156633 15000945 ~ 15001328 (-) True G211349
TU250420 lncRNA upstream 190857 15035169 ~ 15036895 (-) True G211363
XM_026916276.2 mRNA downstream 19007 14768607 ~ 14808228 (-) False LOC113528036
XM_026917075.2 mRNA downstream 88652 14732903 ~ 14738583 (-) True fscn2a
XM_026916905.2 mRNA downstream 118156 14692193 ~ 14709079 (-) True LOC113528386
XM_026916985.2 mRNA downstream 137103 14678750 ~ 14690132 (-) True LOC113528445
XM_026917053.2 mRNA downstream 361944 14463405 ~ 14465291 (-) True LOC113528481
XM_026916168.2 mRNA upstream 31023 14875335 ~ 14878123 (-) False LOC113527964
XM_026916167.2 mRNA upstream 31023 14875335 ~ 14878123 (-) True LOC113527964
XM_026916006.2 mRNA upstream 56521 14900833 ~ 14909395 (-) False otop2
XM_026916007.2 mRNA upstream 56521 14900833 ~ 14909377 (-) False otop2
XM_026916005.2 mRNA upstream 56521 14900833 ~ 14906783 (-) True otop2
XR_004579411.1 other downstream 137103 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 306260 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 336460 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 797594 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 820723 14004169 ~ 14006512 (-) False LOC113528401
XR_003402969.1 other upstream 627465 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2448539 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2448539 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2448539 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 2448539 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile