RNA id: XM_034309689.1


Basic Information

Item Value
RNA id XM_034309689.1
length 1783
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC117598752
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14988086 ~ 14991450 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGGTAACCGGAAGTGCGTCTCCCAGTATTTGCTCCGGGTCGAGCAGATCAGGGTAGAGTAGCACAGAGGGTGGAGTATGAGTTCACTAAGATACGGATAGTGTTTTGAGATTAAAGCGAGTGAGAAAGCATGCTCATGTAATCCAGGACACGGAGCCGGTGCGGGAGCTGGCGGTTGTGGAGCAGCGCGCGCTGAACCGCGGCTTATGGCGGGACTCTCGTGCCTGGTGCTCCGCTTTTCGGGCTCCGCAGGTCGGACCTACGGCGTGTTTTCTAAAGGACTAACGAGGACTTTGTTGATCTTTTTTGATCTGGCGTGGCGTCTCCGCATCCGATTCCCGTATCTCTACCTCATCGCCTCCATGATGTTTAACGTGCGCttacagGTTCACATTGAGATACATTAATTCACGATCTTCCGTTAACTGAAGTGTCATCATCTCTGGACCAGAAGGCTcatatgctgctgctgctgcttcagaAGTCAGCTGAGGCCAAAAGGATCCCCAGTACTGGAAGAACTATGGACACATACACAGAGGCAAAGCTGAAAACGTACCTACACTGTTTCCCCACAGGATAGTGTACAGAAGACGCTCTAGTAGCTCCACAAAAAAATGGGAGTCTTGTGGGATTTTACAGCCGGGCATCTCATACAGCGGCTCGCTGCTGACGGCCGTGGATTTGGAATGGAAATATTTGAGTATTTGAATATAATAGTGTGTTCTGTAACACAATAAAGTAAATGTTGGACATTTCAGGGAGATGTTACAACCTTGGCTCACTTGTAACAATCACAAAAGTGACCAGTTTTGGTTTAGGGAAATgtttattgcctttttttttaataggtcCACTACAGCTCTGAGATGAGTTCGCCTCTTAATTATAGAGGCTTTATCACTGTTGCAAGATGCACACATACTCTCACATGCTCAGTTTGTAAAAGGTCAGGGGAGTTTTTGTTGATTTGGTTATGTAGCACTTGACTGATCTCGCACTTTCGCCGCATGCCACTGAATGTGCTGATTACAGACAGTAATGACTTCTTCTTGTTTACCACTTAGTTTATAATAGAGCCTCTCATGGGATAtggtttttaaatgtacataagGTAACATCAGATTTGtgggttgttgttttgttttggtttttttttcagcacaaatggcatttttctttttttgggatTAGTTAAGCAAAATGTTATGGCCTATATCCTGCAGTAGCCTATAATTTACATTGAAACACACCTTCATAATTACCAAAGGATATtggcacattttaaaacaaagagtCTACTTCGGATTTTGATACAAAAGCATGTCAAGAGGATAAGTTTTAATTGTGGATGCAAAAGATGATTCAGGCAATAGGGTGGcatgaaaaaaaactttagttACAGTCCCTATTCTACCGTTTTACCTCGTGTTGATGAGATGGACTGTTTTGGATGAGTAGTGCTCtgatgtttattaacatttttttttttcatttataatatttttaaagaatgccACAGAACAATAATCCCATCATTTTGTCTGATGGGTTCCACtaattattagtttttattttctgtaaattgCAGTCTTGCCTCCTGCCTGCAAGTCAATTCAGCTGTTTTTAAACAACAGAAAATGGtactttaaaatgtctttaaatatgATATGGATTTTcttgtttgtcttttgtcagtgcattattttaaatgtgcaatTACTTTGAACAGCAAGCATAAGTAATGTAAAAAttagaaaacaataaaagaatGAAGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250322 lncRNA upstream 87795 14899776 ~ 14900306 (+) True G211287
TU250264 lncRNA upstream 143539 14844422 ~ 14844562 (+) True G211247
XR_003402895.2 lncRNA upstream 143729 14841252 ~ 14844372 (+) True LOC113527943
TU250263 lncRNA upstream 144812 14838290 ~ 14843289 (+) False LOC113527943
TU250383 lncRNA downstream 18694 15010142 ~ 15010651 (+) True G211338
XR_004579350.1 lncRNA downstream 212074 15203522 ~ 15204658 (+) True LOC117598819
TU250602 lncRNA downstream 478101 15469549 ~ 15471704 (+) True G211540
TU250605 lncRNA downstream 495089 15486537 ~ 15488982 (+) True G211543
TU250935 lncRNA downstream 714301 15705749 ~ 15706001 (+) True G211838
XM_034309966.1 mRNA upstream 9095 14974576 ~ 14979006 (+) False stk19
XM_026916192.2 mRNA upstream 9095 14974577 ~ 14979006 (+) True stk19
XM_026917170.2 mRNA upstream 47007 14935237 ~ 14941094 (+) True zgc:112148
XM_026917124.2 mRNA upstream 56095 14927553 ~ 14932006 (+) True LOC113528525
XM_026916009.2 mRNA upstream 67424 14912189 ~ 14920677 (+) True ush1ga
XM_026916122.2 mRNA downstream 9422 15000870 ~ 15037047 (+) True cyth3b
XM_026916121.2 mRNA downstream 24386 15015834 ~ 15037047 (+) False cyth3b
XM_026916234.2 mRNA downstream 216658 15208106 ~ 15342947 (+) True cep112
XM_034310109.1 mRNA downstream 217691 15209139 ~ 15342947 (+) False cep112
XM_034310115.1 mRNA downstream 217691 15209139 ~ 15342947 (+) False cep112
XR_004579399.1 other upstream 1495251 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 2799512 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 3410278 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 3450936 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 4570220 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 821794 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 926769 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 1148882 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 2095843 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 3192571 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile