RNA id: TU250397


Basic Information

Item Value
RNA id TU250397
length 364
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G211349
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15000945 ~ 15001328 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACCTTGATTATCATCATCCATGCTTGCTGCTAAATGAGACGGTGAGATAGCAAAAAACGGATAAATACAACGTTCCGAGCCAGATGGCTGTTGCAGTGTCGCTTTTTACGTTGAAGGCTGCATTTACAGGCGACTCGCatcacccgcacacacacacacacacacacgcacgtctGGTCTCGTGTGAGACTCGGACCAAAAATGAGTGTTCAGTGTGCTCGCGAGACAGTCTTCTTCCTGTCCGGTGTGAATGGATGAAAAACCTCTTGGTCCACTTTTTCACTGGTGCTGCTTTTAAATCATTCGGTGGAGTGATGCTCCCTCTCCTTCCTGCCCACCGACACTGACATCTGGTTTTCACG

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250411 lncRNA downstream 17813 14978619 ~ 14983132 (-) True rac1b
TU250394 lncRNA downstream 65824 14934669 ~ 14935121 (-) True G211346
TU250308 lncRNA downstream 153489 14847252 ~ 14847456 (-) True G211274
TU250303 lncRNA downstream 156633 14827235 ~ 14844312 (-) True G211269
TU250196 lncRNA downstream 379163 14619232 ~ 14621782 (-) False G211195
TU250420 lncRNA upstream 33841 15035169 ~ 15036895 (-) True G211363
TU250752 lncRNA upstream 343181 15344509 ~ 15344731 (-) True G211688
TU250805 lncRNA upstream 470444 15471772 ~ 15472816 (-) False G211737
XR_003402916.2 lncRNA upstream 470616 15471944 ~ 15472817 (-) True LOC113528255
TU250806 lncRNA upstream 470620 15471948 ~ 15473343 (-) True G211737
XM_026916674.2 mRNA downstream 14833 14979625 ~ 14986112 (-) False rac1b
XM_034310190.1 mRNA downstream 28361 14955058 ~ 14972584 (-) True LOC113528182
XM_026917169.2 mRNA downstream 53411 14941903 ~ 14947534 (-) True LOC113528557
XM_026917126.2 mRNA downstream 66784 14931916 ~ 14934161 (-) True amn
XM_026916007.2 mRNA downstream 91568 14900833 ~ 14909377 (-) False otop2
XM_026916124.2 mRNA upstream 37042 15038370 ~ 15051643 (-) True cacng5b
XM_034309829.1 mRNA upstream 52216 15053544 ~ 15203184 (-) True si:ch73-374l24.1
XM_034309830.1 mRNA upstream 52216 15053544 ~ 15202792 (-) False si:ch73-374l24.1
XM_026917092.2 mRNA upstream 577126 15578454 ~ 15581065 (-) True LOC113528505
XM_034309803.1 mRNA upstream 581276 15582604 ~ 15595204 (-) False LOC113528397
XR_004579411.1 other downstream 310813 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 479970 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 510170 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 971304 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 994433 14004169 ~ 14006512 (-) False LOC113528401
XR_003402969.1 other upstream 470449 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2291523 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2291523 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2291523 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 2291523 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile