RNA id: TU250602


Basic Information

Item Value
RNA id TU250602
length 2117
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G211540
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15469549 ~ 15471704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gactttgacagtGGCATCGTTGTCGATGCCAAGAcaggctagtttgagtatttcagcaACTGCAGATCtgcagattttcacacacaacagtctctaaggATACACAAAATGTTGCAAAAAGTATAAAACATCCAGGGAGCTGCTATTCTATGGGcaaaaatgccttgttgatgaaagagatcagagaagaatagccagactggtttgaactgacaggaagactactgcaactcaaatacccactctttacaaccagggtgagcagaaaagtattcAAAACTCACATCACACGTTAAGGTGAATGggtacaacaacagaagaccacatcaggctccactcctgtcagctaagaactgaaactagacagttgaaaaAGACCACGCAATTTTACTCCtctcttcaactgtccagtttcagttaACTGGAGCTCTTGGCCTTTATCTGGATGGTTTTCTGtgttgcgctgctgccacatgattggtttaTTGTCCAATTGCATGGATGTGCAGATGTTCCTAATCAAGtgtctggtgagtgtgtgtgtgtttgcagctaAAAGCTACTTTTGTGTGATAGGTAATGTCCTACTGAAGGTATCGGGTGTATCAGAAGCTTTTTACCTCATTTCTTTGCAAGGCAGTGTGGAAGGCCAACTGAGATATTCCCTTGTCACTCCTTTTAAATCATGTCCCTGCTAGTGGCTTTTGATAGGATATCTTAAAATGGTCCTAATTGAGTGTGTGCCACTTTCAGCATTCTTTCAATAATGTAAACTAGTGAGAGTATGTTTGTGGATTTTTGTGTATGCCATGATTATCAATTGCTTTGTGCAAATGTGCTTTCTCAAGGATAACCAATACCATACAGACGCCAACCTTCACAACTCTCTTTGCTGCCCGAGTCATCTGTGTCTATACGATTATGCAATTAGATCAGTTTCACTGTGTTCAAGGACACCAGCTAATATCCCATCTGCCCCAGAAGTGACACTACTCAAGCTGGCTAATCGAGTACATACAAATAAGGCGCTTTCTGTAGACTTTGACTTCTTAACTGAAAACTTTCTGGAACTGGCTGGAAAATGAAATACACAGTACTGTCTTTGCCATGGACTTGTATGCCATTGTGCAATATGGAGAAGCCATCTGAATGTATAAATCATTGCCTGATCATCTCAGTTTATGGGTTTTGTTATGGATGATGTTATTTCAAGATTTACAAAGATTctcaaatttgttttttaatgttgtctCAATTTGTGTTgacaaaaaatgtgttgttttattcaGATAGTAGTTGTAAATATGCTTTAATGATGTGATTGAACATGTAGACCAGGGGTGTTCAACCTTACCTGCAAAAGGCCGATATGGCTGCAGGTTTCCATTCCAAGTCCCACCTATTTGGGTGGATTGAAAGTCTGCAGCCACTTTGGCTATTTGCAGATGTGATTGAAGGATAGACCAAGGGTTTTCAACTCTAGTCCTGGAGGCCCACTGTAATGCAAGACTTCACCGCTTCAAATACACCTGATCAAGGTTTTCTAACCCACCATTATTATAATCCAGTTCCTTTTAAGcatcaaaaatcaaaaacttcAGGGCAGTGAACTTCCTGGACTGGATTTGAGATGTCCTGATATCCGCTACCACTAGACACATTGATGAAGCAGAGGTTCCCATTTAAACTCAAATCCCAAGTCCACAAATATAATTAGATAATCAAGGTCTGTAGATATTGGTTACCAATACTGAgtatgaaacaaaaatgaaaaataggaATCCTTGATGCACCATGGCAACAAGAAAAATAACCCAACAGGACTGGTAGTCAGTTATCTAATGATTGTCACATGTATTTTTGTTGCTTTCCTCAATGCTCTTCATAATTCATTGCAAACATTTCAAAGTACTCTGTCTATTTCTGCTAACTTGAAAACACCTACCACAATATTTATGTGCCATTGTTTGTGGAAGTCAGGCCAATGTTAAATGATCTGTGTGCTTCTCTATGCCAACTTCTCATCATACCTTTTGCACTTTGTGAAAATGATTGCCGTTTTAAGTGATTGTGTTCAGCCATACTGTGACAATGGAATTGTGTGGGGATGTATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579350.1 lncRNA upstream 264891 15203522 ~ 15204658 (+) True LOC117598819
TU250383 lncRNA upstream 458898 15010142 ~ 15010651 (+) True G211338
TU250374 lncRNA upstream 478099 14988144 ~ 14991450 (+) False LOC117598752
TU250373 lncRNA upstream 478146 14988144 ~ 14991403 (+) False LOC117598752
TU250378 lncRNA upstream 478280 14988086 ~ 14991269 (+) False LOC117598752
TU250605 lncRNA downstream 14833 15486537 ~ 15488982 (+) True G211543
TU250935 lncRNA downstream 234045 15705749 ~ 15706001 (+) True G211838
TU250953 lncRNA downstream 368068 15839772 ~ 15840000 (+) True G211856
TU251141 lncRNA downstream 674675 16146379 ~ 16148542 (+) True G212033
TU251137 lncRNA downstream 680551 16152255 ~ 16153553 (+) True G212029
XM_034310300.1 mRNA upstream 143 15437391 ~ 15469406 (+) True tex2
XM_034310301.1 mRNA upstream 143 15445655 ~ 15469406 (+) False tex2
XM_026916236.2 mRNA upstream 97366 15343257 ~ 15372183 (+) True axin2
XM_026916234.2 mRNA upstream 126602 15208106 ~ 15342947 (+) True cep112
XM_034310109.1 mRNA upstream 126602 15209139 ~ 15342947 (+) False cep112
XM_026916617.2 mRNA downstream 1162 15472866 ~ 15501425 (+) True LOC113528209
XM_026916402.2 mRNA downstream 38223 15509927 ~ 15520567 (+) True samd9l
XM_026917304.2 mRNA downstream 51389 15523093 ~ 15534280 (+) True mafga
XM_026917305.2 mRNA downstream 51389 15523093 ~ 15534280 (+) False mafga
XM_026916011.2 mRNA downstream 76800 15548504 ~ 15566563 (+) True LOC113527870
XR_004579399.1 other upstream 1976699 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 3280960 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 3891726 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 3932384 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 5051668 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 341538 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 446513 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 668626 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 1615587 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 2712315 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile