RNA id: TU250805


Basic Information

Item Value
RNA id TU250805
length 707
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G211737
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15471772 ~ 15473343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCTCTGTTCACTTCAGTGGGCTTTCGAGCTGCACGCGCGTGAGCAAGAAAAATAGAAGAATCTATACGTGGGCGCCTTTTTTTCCgcaataaatgaaagaaatgattaCATCTTTGTTCACAGATTGCGTTTCTAAATCAATACTTGGAAACGCGAACCTTGTCTCAGATTATATGCCTGAAATGACATGATGCACGCGAGGACACGTGGACGGTGTATGTAGCTTGTGAACTGTAGCAAATGTTTGGATTGAAATATAAAAGGTGCTGCTGAAACCTGCATGGCACGTGCGCAGTGCATGGCTGATCTTCCGAGAGATAAGGAAAAATGTGGAGCCTAAGAGGAAGACACTGTAAAGCACACAGCCTCTGGTCTAAAGGCTGAGAATGTAGAGATCTGTCTGCAGCCTGCTTTGGATTGATCTAAATGAAGACTTCTGTTTAACAGGTTGAATGAACTTCTAGACAAAGGAAGTATTGTGGGAAAAGATGAATTTGATGCTTctacaataaaacataaattacGTGACCATACACTTTGCCTCCTGTCGTTTATCTTGTTTGGTGGCACTGTCTTTGAACCTTTGAAGCCCTCCTCATGGCTCCATAGGCCAAGCAacagtgcaaaattaaaggCTTGTTATAACTGGGGCTTCTTGGCATCATATCCCAAGTTGCTCTTTTAAAAGCAAACCACAGTTGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250752 lncRNA downstream 127041 15344509 ~ 15344731 (-) True G211688
TU250420 lncRNA downstream 434877 15035169 ~ 15036895 (-) True G211363
TU250397 lncRNA downstream 470444 15000945 ~ 15001328 (-) True G211349
TU250411 lncRNA downstream 488640 14978619 ~ 14983132 (-) True rac1b
TU250394 lncRNA downstream 536651 14934669 ~ 14935121 (-) True G211346
TU250824 lncRNA upstream 36881 15509697 ~ 15510283 (-) True G211751
TU250854 lncRNA upstream 74739 15547555 ~ 15547759 (-) True G211773
TU250855 lncRNA upstream 75011 15547827 ~ 15548062 (-) True G211774
TU250893 lncRNA upstream 150891 15623707 ~ 15623990 (-) False G211800
TU250894 lncRNA upstream 150891 15623707 ~ 15624357 (-) True G211800
XM_034309829.1 mRNA downstream 268588 15053544 ~ 15203184 (-) True si:ch73-374l24.1
XM_034309830.1 mRNA downstream 268980 15053544 ~ 15202792 (-) False si:ch73-374l24.1
XM_026916124.2 mRNA downstream 420129 15038370 ~ 15051643 (-) True cacng5b
XM_026916674.2 mRNA downstream 485660 14979625 ~ 14986112 (-) False rac1b
XM_034310190.1 mRNA downstream 499188 14955058 ~ 14972584 (-) True LOC113528182
XM_026917092.2 mRNA upstream 105638 15578454 ~ 15581065 (-) True LOC113528505
XM_034309803.1 mRNA upstream 109788 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA upstream 109788 15582604 ~ 15595204 (-) True LOC113528397
XM_026916317.2 mRNA upstream 134628 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA upstream 134629 15607445 ~ 15616939 (-) False LOC113528053
XR_004579411.1 other downstream 781640 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 950797 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 980997 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 1442131 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 1465260 14004169 ~ 14006512 (-) False LOC113528401
XR_004579443.1 other upstream 1820035 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1820035 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1820035 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1820035 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1820035 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile