RNA id: TU250894


Basic Information

Item Value
RNA id TU250894
length 651
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G211800
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15623707 ~ 15624357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTCAAGCATGAAAATGACTCTTGGATGTTCGTCCAGAAGGGGAGAAACTCATCTTTAGGCAGATTTGGCAGGCAGAGGGCAGAGCAAAGACAATTAAGTTCCCTCCGTTCCAGCTTAAGGTCATACTGCTTCCACAAGTACAGCATAATGATAGCAGCCTTCAGAGGATCCTTAAtgtattcacttttttttgaTGAGCCATCTTTCTGCAGTTCTGGAGTGACGTGTTCAACCATAAAGTTCTTTATGAGGTTACTTACCTAATATAAAAAAGCAGAACATTAGTATGCATTCTTCTTATTCAAGCAAGGAAATAGTCTAGTAGATGTGGTGTCCAAATTACATCAGTAATACTCACATCTTTTTCAGTGTAATTCAAGGATGACcactttttctccttctcttcatACACAAAGGGGTTTCCGTAGATCTGATGGAACTGCTTGAGCTGTGTGATAAAATTTCTGAGATTGATGTCAGTCCAGCTTCTGAGAAAATCAAAGATTGTCTCAAGCATAACTCTCCCTGCAATCTCTCTTCCttcaatcacatttttcctctgtTCAGTCCAAAATTGTAAGGTgttctttattcttttaaacACGCTCTTAGATGGTTCTGCACAGATTATGTCATCATACTGATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250855 lncRNA downstream 75645 15547827 ~ 15548062 (-) True G211774
TU250854 lncRNA downstream 75948 15547555 ~ 15547759 (-) True G211773
TU250824 lncRNA downstream 113424 15509697 ~ 15510283 (-) True G211751
TU250806 lncRNA downstream 150364 15471948 ~ 15473343 (-) True G211737
TU250897 lncRNA upstream 2219 15626576 ~ 15627023 (-) True G211803
TU250899 lncRNA upstream 4376 15628733 ~ 15629969 (-) True G211805
TU250900 lncRNA upstream 6415 15630772 ~ 15631372 (-) True G211806
TU250901 lncRNA upstream 9323 15633680 ~ 15633897 (-) True G211807
TU250902 lncRNA upstream 10589 15634946 ~ 15635274 (-) True G211808
XM_026916317.2 mRNA downstream 6323 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA downstream 6768 15607445 ~ 15616939 (-) False LOC113528053
XM_034309803.1 mRNA downstream 28503 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA downstream 28503 15582604 ~ 15595204 (-) True LOC113528397
XM_026917092.2 mRNA downstream 42642 15578454 ~ 15581065 (-) True LOC113528505
XM_034310215.1 mRNA upstream 526718 16151075 ~ 16203991 (-) False LOC113528178
XM_034310214.1 mRNA upstream 526718 16151075 ~ 16203991 (-) True LOC113528178
XM_034310216.1 mRNA upstream 526718 16151075 ~ 16203639 (-) False LOC113528178
XM_026916252.2 mRNA upstream 601294 16225651 ~ 16227442 (-) True LOC113528022
XM_026917098.2 mRNA upstream 702528 16326885 ~ 16330539 (-) True sox8a
XR_003402969.1 other downstream 151795 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 933575 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1102732 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1132932 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 1594066 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 1668494 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1668494 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1668494 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1668494 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1668494 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile