RNA id: TU250897


Basic Information

Item Value
RNA id TU250897
length 448
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G211803
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15626576 ~ 15627023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACTACACCAATATGAACACTTGTGTATAGTCAATAGAGAAAAATTTGGCCAGTGACAGCATgcctcatcatgttttattccttacataataatcCTTCAATCATTACATCAATTCACTTAAAGAGTTAGATATTTACACTAACTGAGGAATTGCTGTAGAAAATATCAGCTGGAGCTTTGAGAATGAACAGTTGTAACATGTCAGAAAGCTCGACATGGATATTAGTGCTGCATTCCACCAACTCATCAACAGATATCAGGAACATCCATGATCGAGCCAGCAGTGTGTCCACTTCCACGAGATGACGATTTGCTTTCATGAGATTCAGCATGGACCTGAAAAGATATGCCATATGTACCATATGTTAATACTAACAAGTCCTCAGTTTCTTAAAAACCTGCATGCATTAATTtgcatgtacactcactgaacactttattttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250894 lncRNA downstream 2219 15623707 ~ 15624357 (-) True G211800
TU250892 lncRNA downstream 2219 15624104 ~ 15624357 (-) False G211800
TU250893 lncRNA downstream 2586 15623707 ~ 15623990 (-) False G211800
TU250855 lncRNA downstream 78514 15547827 ~ 15548062 (-) True G211774
TU250854 lncRNA downstream 78817 15547555 ~ 15547759 (-) True G211773
TU250899 lncRNA upstream 1710 15628733 ~ 15629969 (-) True G211805
TU250900 lncRNA upstream 3749 15630772 ~ 15631372 (-) True G211806
TU250901 lncRNA upstream 6657 15633680 ~ 15633897 (-) True G211807
TU250902 lncRNA upstream 7923 15634946 ~ 15635274 (-) True G211808
TU250904 lncRNA upstream 8712 15635735 ~ 15636991 (-) True G211810
XM_026916317.2 mRNA downstream 9192 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA downstream 9637 15607445 ~ 15616939 (-) False LOC113528053
XM_034309803.1 mRNA downstream 31372 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA downstream 31372 15582604 ~ 15595204 (-) True LOC113528397
XM_026917092.2 mRNA downstream 45511 15578454 ~ 15581065 (-) True LOC113528505
XM_034310215.1 mRNA upstream 524052 16151075 ~ 16203991 (-) False LOC113528178
XM_034310214.1 mRNA upstream 524052 16151075 ~ 16203991 (-) True LOC113528178
XM_034310216.1 mRNA upstream 524052 16151075 ~ 16203639 (-) False LOC113528178
XM_026916252.2 mRNA upstream 598628 16225651 ~ 16227442 (-) True LOC113528022
XM_026917098.2 mRNA upstream 699862 16326885 ~ 16330539 (-) True sox8a
XR_003402969.1 other downstream 154664 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 936444 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1105601 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1135801 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 1596935 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 1665828 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1665828 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1665828 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1665828 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1665828 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile