RNA id: TU250900


Basic Information

Item Value
RNA id TU250900
length 601
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G211806
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15630772 ~ 15631372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTGTAAGCAGCTTCTCCAAGACCTGGAAGTCTCCTTGAAGGCCAAGTGCCTCCTTCACCATCATGACTACGTGAGCTGACTCCACTGCCAAGTGAAGTTCGTGATACTGTTCAATCTGTTGAATCCTCCTCTGAATCCACCTCTTGTCATCTGCAGGATCCAGTTTGGACATAATTGTAGCATCTTGTGCtagttctacatattttcctaTGTAGGCTTTAAATAACACATCAACTTCTTCAAAGGTCATGCTGCCATCTTTTAAGCTCTCATATATCTCCCGGTATTTACTGTAGCATGGTTGAAATATGTCTTCATAAATCAAATCCGTTGTAGCCCACAAGTCGTCCTCATCATCTGACTCATATTCACCATGAGCCCTTCTAGCAAATTCTTCAGCTTGACTTTCCCAgcatatcttaaaaatatagCTCTCTTTAAATGAGTGTAGAATCTCAGCCATGTTCCGAATATTGCCATGAAGGTCAAAGTATGTGACAACGCCAGCCATTGGGGATGCAATCTGGTCAAATGGATGAACCTCCATGAACTTATTCAGTTCCATCTCATCAATGTTAATCTGGTGTTTTGCTTCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250899 lncRNA downstream 803 15628733 ~ 15629969 (-) True G211805
TU250897 lncRNA downstream 3749 15626576 ~ 15627023 (-) True G211803
TU250894 lncRNA downstream 6415 15623707 ~ 15624357 (-) True G211800
TU250892 lncRNA downstream 6415 15624104 ~ 15624357 (-) False G211800
TU250893 lncRNA downstream 6782 15623707 ~ 15623990 (-) False G211800
TU250901 lncRNA upstream 2308 15633680 ~ 15633897 (-) True G211807
TU250902 lncRNA upstream 3574 15634946 ~ 15635274 (-) True G211808
TU250904 lncRNA upstream 4363 15635735 ~ 15636991 (-) True G211810
TU251041 lncRNA upstream 260652 15892024 ~ 15968775 (-) True G211935
TU251035 lncRNA upstream 266718 15898090 ~ 15968775 (-) False G211935
XM_026916317.2 mRNA downstream 13388 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA downstream 13833 15607445 ~ 15616939 (-) False LOC113528053
XM_034309803.1 mRNA downstream 35568 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA downstream 35568 15582604 ~ 15595204 (-) True LOC113528397
XM_026917092.2 mRNA downstream 49707 15578454 ~ 15581065 (-) True LOC113528505
XM_034310215.1 mRNA upstream 519703 16151075 ~ 16203991 (-) False LOC113528178
XM_034310214.1 mRNA upstream 519703 16151075 ~ 16203991 (-) True LOC113528178
XM_034310216.1 mRNA upstream 519703 16151075 ~ 16203639 (-) False LOC113528178
XM_026916252.2 mRNA upstream 594279 16225651 ~ 16227442 (-) True LOC113528022
XM_026917098.2 mRNA upstream 695513 16326885 ~ 16330539 (-) True sox8a
XR_003402969.1 other downstream 158860 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 940640 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1109797 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1139997 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 1601131 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 1661479 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1661479 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1661479 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1661479 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1661479 17292851 ~ 17319719 (-) False LOC113528519